Browse Element(s) Details


Os.54543.1.S1_at

Description gb:AK105565.1
DB_XREF= gi:32990774
TID=Os.54543.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C07, full insert sequence.
FL= gb:AK105565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0733011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed
LOC_Os02g07320OsAffx.2535.1.S1_at11/112+3761051..3762806hypothetical protein
LOC_Os02g07330Os.54543.1.S1_at11/112+3772296..3776104expressed protein
LOC_Os02g07330Os.27381.1.S1_at1/112+3772296..3776104expressed protein
LOC_Os02g07340Os.27381.1.S1_at11/112+3778087..3791873HEAT repeat family protein, expressed
LOC_Os02g07350Os.5934.1.S1_at11/112+3792678..3796759Inositol monophosphatase family protein, expressed
LOC_Os02g07360Os.15690.1.S1_at10/112+3797704..3800985pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54543.1.S1_at--803--10431Chr02:3775453..3775477 (25 bp)
TTATGTTGCGTCTGTGGAGCTCCCA
LOC_Os02g07330
Os.54543.1.S1_at--1041--1191Chr02:3775480..3775504 (25 bp)
AGTTGGCCAAAGTGTATCCCAGGGA
LOC_Os02g07330
Os.54543.1.S1_at--269--7691Chr02:3775546..3775570 (25 bp)
GGGTATTAACTCACCAGTATCTGGA
LOC_Os02g07330
Os.54543.1.S1_at--791--2531Chr02:3775593..3775617 (25 bp)
AACTAAGCGATTTACCTGGATTGGT
LOC_Os02g07330
Os.54543.1.S1_at--82--6571Chr02:3775744..3775768 (25 bp)
GATTCAGGCGAGCTCAATTCGCTCA
LOC_Os02g07330
Os.54543.1.S1_at--783--51Chr02:3775826..3775850 (25 bp)
ATTGCAGTGAGTCTTGATCCTTGTC
LOC_Os02g07330
Os.54543.1.S1_at--7--7291Chr02:3775863..3775887 (25 bp)
GTGCCATATCACTTACCAATCTGTT
LOC_Os02g07330
Os.54543.1.S1_at--42--6631Chr02:3775885..3775909 (25 bp)
GTTGGTCTGTATCATGTTGGCATTC
LOC_Os02g07330
Os.54543.1.S1_at--483--6611Chr02:3775900..3775924 (25 bp)
GTTGGCATTCGCTAACACGTAACGT
LOC_Os02g07330
Os.54543.1.S1_at--54--5271Chr02:3775954..3775978 (25 bp)
GAATCCCTTCCCTGTTTATGTTGTT
LOC_Os02g07330
Os.54543.1.S1_at--1096--8711Chr02:3776039..3776063 (25 bp)
TGATGCCAATTCTGCCAAAACCGGT
LOC_Os02g07330
Target Sequence 
TTATGTTGCGTCTGTGGAGCTCCCAGAAGTTGGCCAAAGTGTATCCCAGGGAAATAAATTTGGTGTTGTTGTAAGTGTGA
AGGGAACCACCAGGGGTATTAACTCACCAGTATCTGGAGAGGTTGTTGAAGTGAATGATCAACTAAGCGATTTACCTGGA
TTGGTAAATGCAAGGCCATACGAGACAGGGTGGATTATCGTGGTCAAGATCAGTGATTCAGGCGAGCTCAATTCGCTCAT
GAATGACGAGGATTACTCAAAATTTTGCAAGGGAGAAAAAGACAAGTATTGAACAAATTGCAGTGAGTCTTGATCCTTGT
CAATGCTTGTGATGTGCCATATCACTTACCAATCTGTTGGTCTGTATCATGTTGGCATTCGCTAACACGTAACGTGATGC
TCAAACAGACTCAGGAACATGTTGGAATCCCTTCCCTGTTTATGTTGTTTAGGATGAAACTGTTGTCGCAAGTGAACATG
CAAGTATAGCACCCCTAATTAAGCTATAATGATGCCAATTCTGCCAAAACCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis