Browse Element(s) Details


Os.5934.1.S1_at

Description gb:AK070107.1
DB_XREF= gi:32980131
TID=Os.5934.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047B05, full insert sequence.
FL= gb:AK105887.1 gb:AK099345.1 gb:AK070107.1 gb:AK103039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0735011/11Inositol monophosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07330Os.54543.1.S1_at11/112+3772296..3776104expressed protein
LOC_Os02g07330Os.27381.1.S1_at1/112+3772296..3776104expressed protein
LOC_Os02g07340Os.27381.1.S1_at11/112+3778087..3791873HEAT repeat family protein, expressed
LOC_Os02g07350Os.5934.1.S1_at11/112+3792678..3796759Inositol monophosphatase family protein, expressed
LOC_Os02g07360Os.15690.1.S1_at10/112+3797704..3800985pentatricopeptide, putative, expressed
LOC_Os02g07370Os.49936.2.A1_at3/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.52238.1.S1_at2/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.33601.3.S1_x_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370OsAffx.15708.1.S1_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07380NANA2+3811254..3817625retrotransposon protein, putative, unclassified
LOC_Os02g07390NANA2+3820396..3820992hypothetical protein
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5934.1.S1_at--629--1851Chr02:3793945..3793969 (25 bp)
ACGAAGACTAGGTTCTGCTGCTGCT
LOC_Os02g07350
Os.5934.1.S1_at--307--4371Chr02:3793912..3793936 (25 bp)
CCACGTTGCCCTAGGCATTACAGAA
LOC_Os02g07350
Os.5934.1.S1_at--941--5411Chr02:3793890..3793914 (25 bp)
GAAGCCTACTGGGAATACCGACTTA
LOC_Os02g07350
Os.5934.1.S1_at--861--5231Chr02:3793878..3793902 (25 bp)
GAATACCGACTTAAGCCTTGGGATA
LOC_Os02g07350
Os.5934.1.S1_at--674--6811Chr02:3793539..3793563 (25 bp)
GTTTACCGTCTTTGATCGTTCTGTC
LOC_Os02g07350
Os.5934.1.S1_at--230--491Chr02:3793525..3793549 (25 bp)
ATCGTTCTGTCCTTGTTTCCAATGG
LOC_Os02g07350
Os.5934.1.S1_at--1045--9611Chr02:3792942..3792965 (24 bp)
TCAGCTTTTGGATCGGATTGGCCCT
LOC_Os02g07350
Os.5934.1.S1_at--917--11Chr02:3792926..3792950 (25 bp)
ATTGGCCCTGCCACAGAAGATCTTA
LOC_Os02g07350
Os.5934.1.S1_at--459--2551Chr02:3792835..3792859 (25 bp)
AACTCCTCACCCAGAGCTATTTTAT
LOC_Os02g07350
Os.5934.1.S1_at--1104--9811Chr02:3792772..3792796 (25 bp)
TAAAATGCCATGTACTTGACTGAAT
LOC_Os02g07350
Os.5934.1.S1_at--1122--10751Chr02:3792728..3792752 (25 bp)
TTGACTCAGCCATCGACTTTTGTTG
LOC_Os02g07350
Target Sequence 
ACGAAGACTAGGTTCTGCTGCTGCTGACATGTCCCACGTTGCCCTAGGCATTACAGAAGCCTACTGGGAATACCGACTTA
AGCCTTGGGATATGGCTGCTGGTGTTCTGATAGTTGAAGAAGCTGGTGGGATGGTGTCACGCATGGATGGTGGGGAGTTT
ACCGTCTTTGATCGTTCTGTCCTTGTTTCCAATGGTGTTGTACATGATCAGCTTTTGGATCGGATTGGCCCTGCCACAGA
AGATCTTAAGAAGAAAGGAATTGATTTCTCCTTGTGGTTTAAACCCGACAAATACCCTACCGACTTTTAAGTTGAACTCC
TCACCCAGAGCTATTTTATACTACTAGAAGAAAAGAGAAAAACAGAGGATCTTATGTTAAAATGCCATGTACTTGACTGA
ATATTTGTTTATTGAAGTCCTTTGACTCAGCCATCGACTTTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis