Browse Element(s) Details


Os.54554.1.S1_at

Description gb:AK105584.1
DB_XREF= gi:32990793
TID=Os.54554.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E10, full insert sequence.
FL= gb:AK105584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2725011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein
LOC_Os08g27260OsAffx.29379.1.S1_at11/118+16512898..16513149hypothetical protein
LOC_Os08g27270OsAffx.21897.5.S1_x_at6/118+16518364..16521304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27280NANA8+16521622..16527714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27290OsAffx.17186.1.S1_at10/118+16529002..16531708hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54554.1.S1_at--292--2611Chr08:16507461..16507485 (25 bp)
AACCTAGGTTTATACTTCCGTCATG
LOC_Os08g27250
Os.54554.1.S1_at--73--7911Chr08:16507396..16507420 (25 bp)
GGTTCGGTTCTGTATCTTGACAACA
LOC_Os08g27250
Os.54554.1.S1_at--1146--3752Chr10:13414026..13414050 (25 bp)
CTCGACGTCCGAATCAGGTGGGTTG
NONE
Os.54554.1.S1_at--949--7571Chr08:16507317..16507341 (25 bp)
GGGCGTGGAGTTGACATGTACCCAA
LOC_Os08g27250
Os.54554.1.S1_at--443--9672Chr10:13414108..13414132 (25 bp)
TCAGCGAACATCGTGTCATCTGCTT
NONE
Os.54554.1.S1_at--51--9611Chr08:16507272..16507296 (25 bp)
TCATCTGCTTCCATCGAGGGCGACA
LOC_Os08g27250
Os.54554.1.S1_at--347--1931Chr08:16507151..16507175 (25 bp)
ACGGACGGAGCTGGAACATGTTCTT
LOC_Os08g27250
Os.54554.1.S1_at--249--10552Chr10:13414268..13414292 (25 bp)
TTCTTCGGAATTAGTCGCTTTGGCG
NONE
Os.54554.1.S1_at--1077--6851Chr08:16507100..16507124 (25 bp)
GTTTGGGCAATCTCATCCATGGGAT
LOC_Os08g27250
Os.54554.1.S1_at--1120--7591Chr08:16507059..16507083 (25 bp)
GGGCACTTGTGCAGAAGCCGTGATA
LOC_Os08g27250
Os.54554.1.S1_at--510--6411Chr08:16506987..16507011 (25 bp)
GATCTGATCCGTGCTAATCCAGGGA
LOC_Os08g27250
Target Sequence 
AACCTAGGTTTATACTTCCGTCATGAATTTTTTTTATTCTCCATCATGATACTTCTTTTTGTACAGGTTCGGTTCTGTAT
CTTGACAACATCCTCGACGTCCGAATCAGGTGGGTTGAGGTCATCAATGTCCGATGGTGGAGATGGGCGTGGAGTTGACA
TGTACCCAAAATCTTCAGCGAACATCGTGTCATCTGCTTCCATCGAGGGCGACAGCAGGAATGGGTCTGGGGAAGGCGGT
GGTGGCTCCGACACACGAAACTCTTCGGGGGAGTTCACATACCTCCTCACGGTGCTCCGACGTGGTATTAACGGACGGAG
CTGGAACATGTTCTTCGGAATTAGTCGCTTTGGCGGTAGATGTTTGGGCAATCTCATCCATGGGATGAGTTGGGTCTGTG
TTGGGCACTTGTGCAGAAGCCGTGATAGTCAAGTTTATAAAAGGGAATGCAAACCTTGCAAACAGAAATCACGGGATCTG
ATCCGTGCTAATCCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis