Browse Element(s) Details


Os.54563.1.S1_at

Description gb:AK105749.1
DB_XREF= gi:32990958
TID=Os.54563.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B09, full insert sequence.
FL= gb:AK105749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4083011/11cucumisin-like serine protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40790OsAffx.13272.1.S1_at11/113+22638605..22638883hypothetical protein
LOC_Os03g40800NANA3+22643748..22644934hypothetical protein
LOC_Os03g40820OsAffx.8789.1.S1_at2/113+22648735..22651324retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40830Os.54563.1.S1_at11/113+22657624..22660140cucumisin-like serine protease, putative, expressed
LOC_Os03g40840OsAffx.16811.2.S1_at10/113+22664724..22667796hypothetical protein
LOC_Os03g40860OsAffx.25460.1.S1_at11/113+22676530..22676787hypothetical protein
LOC_Os03g40870OsAffx.22722.1.S1_x_at1/113+22677622..22684053retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54563.1.S1_at--268--9031Chr03:22659602..22659626 (25 bp)
TGCACGGAGGGCAAGGCCTACTCCG
LOC_Os03g40830
Os.54563.1.S1_at--763--1891Chr03:22659758..22659782 (25 bp)
ACGTACAAGGTGAGCGCGGCCGCCA
LOC_Os03g40830
Os.54563.1.S1_at--606--5911Chr03:22659859..22659883 (25 bp)
GAGCTTCACGGCGAAGTCGCAGCCG
LOC_Os03g40830
Os.54563.1.S1_at--717--8471Chr03:22659936..22659960 (25 bp)
TGGCGAGCCCGATGGCATTTACGTG
LOC_Os03g40830
Os.54563.1.S1_at--1084--4531Chr03:22659942..22659966 (25 bp)
GCCCGATGGCATTTACGTGGACATG
LOC_Os03g40830
Os.54563.1.S1_at--297--691Chr03:22659967..22659991 (25 bp)
ATGAGCGCCGCCAAGTCAGAGTGGT
LOC_Os03g40830
Os.54563.1.S1_at--760--1332Chr03:22659984..22660008 (25 bp)
AGAGTGGTCACCACACACACACGCA
LOC_Os03g40830
Os.54563.1.S1_at--345--2111Chr03:22660002..22660026 (25 bp)
ACACGCACACTACCACGGTTAAAGG
LOC_Os03g40830
Os.54563.1.S1_at--495--9931Chr03:22660012..22660036 (25 bp)
TACCACGGTTAAAGGGCTGGAGTGT
LOC_Os03g40830
Os.54563.1.S1_at--1078--211Chr03:22660076..22660100 (25 bp)
ATTTGGTGGTATTTCGAAGTGTTCA
LOC_Os03g40830
Os.54563.1.S1_at--950--191Chr03:22660086..22660110 (25 bp)
ATTTCGAAGTGTTCATAATGCTATT
LOC_Os03g40830
Target Sequence 
TGCACGGAGGGCAAGGCCTACTCCGTGTACAACCTNAACTACCNGTCCTTCGCCGTGGCGTACTCGACGGCGAGCAGCCA
GGCGGCGGAGAGNTCCGGCGCGGCGGCGACGACGGTGACGCACAGGNGCACGCTCACCAACGTCGGNGCGGCGGGGACGT
ACAAGGTGAGCGCGGCCGCCATGCCTGGCGTGGCCGTGGCCGTGGAGCCGACCGAGCTGGCGTTCACGTCGGCCGGCGAG
AAGAAGAGCTACACGGTGAGCTTCACGGCGAAGTCGCAGCCGTCGGGCACCGCCGGATTCGGCCGCCTCGTCTGGTCGGA
CGGCAAGCACAGCGTGGCGAGCCCGATGGCATTTACGTGGACATGATGAGCGCCGCCAAGTCAGAGTGGTCACCACACAC
ACACGCACACTACCACGGTTAAAGGGCTGGAGTGTAAAAAAAATATTTGGGTGGATTTGGGAGGGGGTTTAAAAATTTGG
TGGTATTTCGAAGTGTTCATAATGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis