Browse Element(s) Details


Os.54634.1.S1_at

Description gb:AK106323.1
DB_XREF= gi:32991532
TID=Os.54634.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E11, full insert sequence.
FL= gb:AK106323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4385011/11retrotransposon protein, putative, unclassified
LOC_Os09g038601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified
LOC_Os12g43860Os.40360.1.S1_x_at1/1112+27200181..27200807hypothetical protein
LOC_Os12g43870NANA12+27205413..27205739hypothetical protein
LOC_Os12g43880OsAffx.32182.1.S1_at11/1112+27210143..27212401expressed protein
LOC_Os12g43890Os.24486.1.A1_at11/1112+27216117..27217280GNS1/SUR4 membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54634.1.S1_at--758--4471Chr12:27187935..27187959 (25 bp)
GCCTGTCAGTAATCGTGCAGATGAG
LOC_Os12g43850
Os.54634.1.S1_at--541--6752Chr12:27187967..27187991 (25 bp)
GTTCAGATACTGTTCGCAGTCCGAC
LOC_Os12g43850
Os.54634.1.S1_at--386--7211Chr12:27187985..27188009 (25 bp)
GTCCGACAAGCCTAACTGAAAAAGT
LOC_Os12g43850
Os.54634.1.S1_at--336--8971Chr12:27188001..27188025 (25 bp)
TGAAAAAGTGTCTGCTCTGAAATCT
LOC_Os12g43850
Os.54634.1.S1_at--445--2891Chr12:27188039..27188063 (25 bp)
AAGGGTTGTGTTATGTCTGTGCTGA
LOC_Os12g43850
Os.54634.1.S1_at--921--7791Chr12:27188069..27188093 (25 bp)
GGTCTCCAAATCATAAGTGTGCTTC
LOC_Os12g43850
Os.54634.1.S1_at--328--2871Chr12:27188083..27188107 (25 bp)
AAGTGTGCTTCATCAGTGCAATTGA
LOC_Os12g43850
Os.54634.1.S1_at--546--10411Chr12:27188188..27188212 (25 bp)
TTGACTAGGGAACTTATGGCCATTT
LOC_Os12g43850
Os.54634.1.S1_at--910--871Chr12:27188203..27188227 (25 bp)
ATGGCCATTTCCTTACAAGCAGTAC
LOC_Os12g43850
Os.54634.1.S1_at--598--1091Chr12:27188295..27188319 (25 bp)
AGTGGATTCCGGCAGTTCTGTCAGC
LOC_Os12g43850
Os.54634.1.S1_at--256--1231Chr12:27188308..27188332 (25 bp)
AGTTCTGTCAGCTTCATTAGTTCAC
LOC_Os12g43850
Target Sequence 
GCCTGTCAGTAATCGTGCAGATGAGAGACGCAGTTCAGATACTGTTCGCAGTCCGACAAGCCTAACTGAAAAAGTGTCTG
CTCTGAAATCTTATCGGCGAGCTCAAGGGTTGTGTTATGTCTGTGCTGAGAAGTGGTCTCCAAATCATAAGTGTGCTTCA
TCAGTGCAATTGAATGTGGTACAAGAGTTACTATGTCTGTTCTTAGAAGAAGACAGTCATGTTGAATCAGAGAATGCTGG
ACAGAATGGTTCTTTGACTAGGGAACTTATGGCCATTTCCTTACAAGCAGTACAAGGGACTGAACCAGATGGAACCATGC
GAATGTTGGGGCAATTACAGGGTAAGGAGTTATTGGTTTTAGTGGATTCCGGCAGTTCTGTCAGCTTCATTAGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis