Browse Element(s) Details


Os.54682.1.S1_at

Description gb:AK106462.1
DB_XREF= gi:32991671
TID=Os.54682.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G08, full insert sequence.
FL= gb:AK106462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4598010/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein
LOC_Os02g45960Os.35344.18.S1_x_at11/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960Os.35344.3.S1_x_at9/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_x_at4/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_at3/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45969NANA2+28004107..28005249NA
LOC_Os02g45980Os.54682.1.S1_at10/112+28008953..28014651Regulator of chromosome condensation family protein, expressed
LOC_Os02g45990NANA2+28017283..28020211hypothetical protein
LOC_Os02g46000OsAffx.20387.1.S1_x_at1/112+28021498..28023975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46010NANA2+28024633..28027046retrotransposon protein, putative, unclassified
LOC_Os02g46020OsAffx.22896.1.S1_x_at1/112+28029729..28030166transposon protein, putative, unclassified
LOC_Os02g46030Os.8149.1.S1_at11/112+28035248..28038280myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54682.1.S1_at--259--10071Chr02:28013974..28013998 (25 bp)
TAGGGAATGCACACAACCTTCAATT
LOC_Os02g45980
Os.54682.1.S1_at--792--3151Chr02:28013995..28014019 (25 bp)
AATTGCTTCCATGGCGAATTACTCG
LOC_Os02g45980
Os.54682.1.S1_at--962--5211Chr02:28014010..28014034 (25 bp)
GAATTACTCGGTTACGCATCAGAAT
LOC_Os02g45980
Os.54682.1.S1_at--580--5371Chr02:28014039..28014063 (25 bp)
GAAGAACTTCCAACGGCAGCACCAG
LOC_Os02g45980
Os.54682.1.S1_at--168--6591NONE
GATTCCAACGGTGCGATCGAGCAGA
NONE
Os.54682.1.S1_at--1097--6811Chr02:28014137..28014161 (25 bp)
GTTTACGCGACAGTGGTTACATCCC
LOC_Os02g45980
Os.54682.1.S1_at--1132--2731Chr02:28014170..28014194 (25 bp)
AAGAAGTGCATCAAGCGCATCCGGT
LOC_Os02g45980
Os.54682.1.S1_at--191--2311Chr02:28014432..28014456 (25 bp)
AAAGGAATAGTCAGCTCTGCCGCCA
LOC_Os02g45980
Os.54682.1.S1_at--620--3391Chr02:28014443..28014467 (25 bp)
CAGCTCTGCCGCCAAATTGTTAATA
LOC_Os02g45980
Os.54682.1.S1_at--350--631Chr02:28014493..28014517 (25 bp)
ATGCTACTGCTCGATGAACTGGCGT
LOC_Os02g45980
Os.54682.1.S1_at--842--2551Chr02:28014590..28014614 (25 bp)
AACTGCATCTGGATTGTGCGGCTGT
LOC_Os02g45980
Target Sequence 
TAGGGAATGCACACAACCTTCAATTGCTTCCATGGCGAATTACTCGGTTACGCATCAGAATTGCAGAAGAACTTCCAACG
GCAGCACCAGATGCACCGAGGGAACAGATGCCACCACTGCTCCTACCGATTCCAACGGTGCGATCGAGCAGATCGAGCGC
GGGGTTTACGCGACAGTGGTTACATCCCCCGGTGGGAAGAAGTGCATCAAGCGCATCCGGTTCAGTCGGAAGCACTTTGG
AGAGGATCAGGCGCAGAAATGGTGGGAAGCCAATGAGAGCATGATTTTTGGAAAATACAGCAGCATGGAACAAACGGTGG
GGTAATCTCTTCTCCAACTCCAAGCAACCCAAATGAAGAACATAAAGGAATAGTCAGCTCTGCCGCCAAATTGTTAATAG
GACACAGTAGAAGTAGATAGAAATATGCTACTGCTCGATGAACTGGCGTGGATAGGATGGGGATCATGGAGAAAAATCAG
AAAAAGGGGTTGAGACTTTGAGAGACCAGCTCTGAACAGTAAACTGCATCTGGATTGTGCGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis