Browse Element(s) Details


Os.54738.1.S1_at

Description gb:AK106640.1
DB_XREF= gi:32991849
TID=Os.54738.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E03, full insert sequence.
FL= gb:AK106640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3107410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31040OsAffx.24519.1.S1_at11/112+18540823..185463662-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase family protein, expressed
LOC_Os02g31050OsAffx.12302.1.S1_at10/112+18547487..18548899hypothetical protein
LOC_Os02g31060OsAffx.12303.1.S1_at11/112+18550615..18550854hypothetical protein
LOC_Os02g31070Os.9275.1.S1_x_at11/112+18558372..18562655expressed protein
LOC_Os02g31074Os.54738.1.S1_at10/112+18563896..18567292expressed protein
LOC_Os02g31074Os.7658.1.S1_x_at1/112+18563896..18567292expressed protein
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31090NANA2+18584406..18585032hypothetical protein
LOC_Os02g31100Os.16026.1.S1_at11/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31100OsAffx.24521.1.S1_at5/112+18586654..18590521LITAF-domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54738.1.S1_at--148--1011Chr02:18564454..18564478 (25 bp)
AGGTACAGCAGTCGGTCCTATTCCT
LOC_Os02g31074
Os.54738.1.S1_at--339--4331Chr02:18564413..18564437 (25 bp)
CCATTATCATGTGGCGGTGACAGCT
LOC_Os02g31074
Os.54738.1.S1_at--247--9272Chr01:16880287..16880794 (25 bp)
TCCTGCTCAATGCATGAACCGACGG
NONE
Os.54738.1.S1_at--134--5391Chr02:18564324..18564348 (25 bp)
GAAGCTCAGCGGCAGTAGCACAAGC
LOC_Os02g31074
Os.54738.1.S1_at--242--2391Chr02:18564275..18564299 (25 bp)
AAACTGCTGGCTTTGTTTGCATGAA
LOC_Os02g31074
Os.54738.1.S1_at--641--10871Chr02:18564241..18564265 (25 bp)
TTGGCTTCTTGGTCAGTATTTCTGT
LOC_Os02g31074
Os.54738.1.S1_at--551--1951Chr02:18564211..18564235 (25 bp)
ACTGGCAGGCTACTGAGCATGGTTT
LOC_Os02g31074
Os.54738.1.S1_at--1039--231Chr02:18564182..18564206 (25 bp)
ATATAAGCTGGTATCCTGTGCAAAA
LOC_Os02g31074
Os.54738.1.S1_at--225--8931Chr02:18564039..18564063 (25 bp)
TGACCTACGCGTTTGCTACTGCTGC
LOC_Os02g31074
Os.54738.1.S1_at--425--9531Chr02:18564013..18564037 (25 bp)
TCTCACTGGCTTAGTGCTATGCTTA
LOC_Os02g31074
Os.54738.1.S1_at--996--171Chr02:18563896..18563920 (25 bp)
ATTTATCCATACACTTGGCCACTTG
NONE
Target Sequence 
AGGTACAGCAGTCGGTCCTATTCCTCCATGACGCAGNGAGGCCATTATCATGTGGCGGTGACAGCTCCGCGAGGAACCGG
AGGAGGGTTAGCCTCTCCTGCTCAATGCATGAACCGACGGGAGGACAGATGAAGCTCAGCGGCAGTAGCACAAGCGCAAG
GTGAAAGAAATTCATGCGAAAACTGCTGGCTTTGTTTGCATGAAGGATGTGATTTGGCTTCTTGGTCAGTATTTCTGTCA
GAAACTGGCAGGCTACTGAGCATGGTTTGCCAATATAAGCTGGTATCCTGTGCAAAAAAAATACAGTCCNTGAGCTATAT
ATTGTCGAATNACATTGCTAAATTCCTTGCAGAGAGAAAGAATNGCATTGCCTAAACGCACCAAACAGGNCGAAGAACAA
TAAGCTGATGGAATGNTGACCTACGCGTTTGCTACTGCTGCCTCTCACTGGCTTAGTGCTATGCTTAGGTATGGNTTTGT
AAATTCGATCTATTATTTGCTTTCAGCATGANGTGNTAGACTCACATTGTTTGACGGAAATACTTGCACTTAAAANGTAT
ATTTATCCATACACTTGGCCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis