Browse Element(s) Details


Os.16026.1.S1_at

Description gb:AK058947.1
DB_XREF= gi:32968965
TID=Os.16026.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A03, full insert sequence.
FL= gb:AK058947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3110011/11LITAF-domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31070Os.9275.1.S1_x_at11/112+18558372..18562655expressed protein
LOC_Os02g31074Os.54738.1.S1_at10/112+18563896..18567292expressed protein
LOC_Os02g31074Os.7658.1.S1_x_at1/112+18563896..18567292expressed protein
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31090NANA2+18584406..18585032hypothetical protein
LOC_Os02g31100Os.16026.1.S1_at11/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31100OsAffx.24521.1.S1_at5/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31110OsAffx.12305.1.S1_at10/112+18592697..18595331retrotransposon, putative, centromere-specific
LOC_Os02g31120Os.44163.1.S1_at1/112+18599144..18603219retrotransposon protein, putative, unclassified, expressed
LOC_Os02g31129OsAffx.16980.1.S1_at1/112+18608726..18610430NA
LOC_Os02g31129OsAffx.29429.1.S1_x_at1/112+18608726..18610430NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16026.1.S1_at--822--10611Chr02:18586927..18586951 (25 bp)
TTCGCTGTGCCTGCGTAAGAACATA
LOC_Os02g31100
Os.16026.1.S1_at--515--5491Chr02:18586909..18586933 (25 bp)
GAACATACCCTCTTGATATCCAAAC
LOC_Os02g31100
Os.16026.1.S1_at--941--6491Chr02:18586895..18586919 (25 bp)
GATATCCAAACCGTTTCCATGGATG
LOC_Os02g31100
Os.16026.1.S1_at--1020--6731Chr02:18586857..18586881 (25 bp)
GTTCTTGAGTGATCTGCTCTGTACA
LOC_Os02g31100
Os.16026.1.S1_at--815--8211Chr02:18586825..18586849 (25 bp)
GGCAACTACCTTGTTGTATACCATA
LOC_Os02g31100
Os.16026.1.S1_at--1123--6871Chr02:18586795..18586819 (25 bp)
GTATCTAAACCGCTGTATTTTCGCT
LOC_Os02g31100
Os.16026.1.S1_at--435--1971Chr02:18586760..18586784 (25 bp)
ACTGTTTATTCATGTTTGTCACTCG
LOC_Os02g31100
Os.16026.1.S1_at--235--6871Chr02:18586747..18586771 (25 bp)
GTTTGTCACTCGATCATCTGACGGG
LOC_Os02g31100
Os.16026.1.S1_at--1016--9051Chr02:18586706..18586730 (25 bp)
TGCATATTTATTCGCGGTTGCACCA
LOC_Os02g31100
Os.16026.1.S1_at--1134--9331Chr02:18586695..18586719 (25 bp)
TCGCGGTTGCACCAATTATATACAT
LOC_Os02g31100
Os.16026.1.S1_at--645--3031Chr02:18586666..18586690 (25 bp)
AATCCTAGCTATGGGTTGGCATCAT
LOC_Os02g31100
Target Sequence 
TTCGCTGTGCCTGCGTAAGAACATACCCTCTTGATATCCAAACCGTTTCCATGGATGAGAANTATGCATTGTTCTTGAGT
GATCTGCTCTGTACATAGAGAAGGCAACTACCTTGTTGTATACCATATATATGTATCTAAACCGCTGTATTTTCGCTAAA
GTAATGAACTGTTTATTCATGTTTGTCACTCGATCATCTGACGGGGTTCAATTTAGACATTTGCATATTTATTCGCGGTT
GCACCAATTATATACATATCCAATCCTAGCTATGGGTTGGCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis