Browse Element(s) Details


Os.56036.1.S1_at

Description gb:AK109156.1
DB_XREF= gi:32994365
TID=Os.56036.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G03, full insert sequence.
FL= gb:AK109156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3108011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31040OsAffx.24519.1.S1_at11/112+18540823..185463662-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase family protein, expressed
LOC_Os02g31050OsAffx.12302.1.S1_at10/112+18547487..18548899hypothetical protein
LOC_Os02g31060OsAffx.12303.1.S1_at11/112+18550615..18550854hypothetical protein
LOC_Os02g31070Os.9275.1.S1_x_at11/112+18558372..18562655expressed protein
LOC_Os02g31074Os.54738.1.S1_at10/112+18563896..18567292expressed protein
LOC_Os02g31074Os.7658.1.S1_x_at1/112+18563896..18567292expressed protein
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31090NANA2+18584406..18585032hypothetical protein
LOC_Os02g31100Os.16026.1.S1_at11/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31100OsAffx.24521.1.S1_at5/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31110OsAffx.12305.1.S1_at10/112+18592697..18595331retrotransposon, putative, centromere-specific
LOC_Os02g31120Os.44163.1.S1_at1/112+18599144..18603219retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56036.1.S1_at--1017--7291Chr02:18575458..18575482 (25 bp)
GTGCGCGAGTCCATCGACTTATTGA
LOC_Os02g31080
Os.56036.1.S1_at--671--8831Chr02:18575424..18575448 (25 bp)
TGATTTATTGATTTCTTCCTCTCCT
LOC_Os02g31080
Os.56036.1.S1_at--621--191Chr02:18575362..18575386 (25 bp)
ATTTCTGTGATCAAATCGGCGTCAA
LOC_Os02g31080
Os.56036.1.S1_at--253--2451Chr02:18575339..18575363 (25 bp)
AAAATCGGATCTTGGGAGGAGCCCT
LOC_Os02g31080
Os.56036.1.S1_at--597--6171Chr02:18575324..18575348 (25 bp)
GAGGAGCCCTATGCGAAATTGCGAT
LOC_Os02g31080
Os.56036.1.S1_at--1066--4591Chr02:18575312..18575336 (25 bp)
GCGAAATTGCGATTTTTAGCCACCC
LOC_Os02g31080
Os.56036.1.S1_at--1105--8771Chr02:18575280..18575304 (25 bp)
TGTTTTCCAGGTGGAGTGCGCTGTT
LOC_Os02g31080
Os.56036.1.S1_at--812--10551Chr02:18575257..18575281 (25 bp)
TTCTTTGGTTGGTGCACTCGTTTAT
LOC_Os02g31080
Os.56036.1.S1_at--156--5631Chr02:18575101..18575125 (25 bp)
GATGGTCATTGGTGGTCGTTTAGAA
LOC_Os02g31080
Os.56036.1.S1_at--1123--371Chr02:18575074..18575098 (25 bp)
ATCAAAGCTTTGAACTTGCCCCGTG
LOC_Os02g31080
Os.56036.1.S1_at--804--9151Chr02:18575058..18575082 (25 bp)
TGCCCCGTGTTGATTCAAGCGTGCA
LOC_Os02g31080
Target Sequence 
GTGCGCGAGTCCATCGACTTATTGATTAATTGATTGATTTATTGATTTCTTCCTCTCCTCCTCCCATCTATCTCCTGTTT
TTTTTTTTTTTTTTGGGATTTCTGTGATCAAATCGGCGTCAAAATCGGATCTTGGGAGGAGCCCTATGCGAAATTGCGAT
TTTTAGCCACCCCCCGCGTTGTTTTCCAGGTGGAGTGCGCTGTTCTTTGGTTGGTGCACTCGTTTATTGATTAGGTGTGG
ATGCTCAAAATGATTTTACTACTAGTAGTATTTTGGTTATTCAATGCGGCTGGAGGAACAGAGCTCGAACTGTTTAAATA
GAAATTGATCCATCAATTTTCGTTTTTAATTATTTTCTGATGGTCATTGGTGGTCGTTTAGAATAATCAAAGCTTTGAAC
TTGCCCCGTGTTGATTCAAGCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis