Browse Element(s) Details


OsAffx.12305.1.S1_at

Description tigr:9630.m02986
TID=OsAffx.12305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3111010/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31090NANA2+18584406..18585032hypothetical protein
LOC_Os02g31100Os.16026.1.S1_at11/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31100OsAffx.24521.1.S1_at5/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31110OsAffx.12305.1.S1_at10/112+18592697..18595331retrotransposon, putative, centromere-specific
LOC_Os02g31120Os.44163.1.S1_at1/112+18599144..18603219retrotransposon protein, putative, unclassified, expressed
LOC_Os02g31129OsAffx.16980.1.S1_at1/112+18608726..18610430NA
LOC_Os02g31129OsAffx.29429.1.S1_x_at1/112+18608726..18610430NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12305.1.S1_at--953--7291Chr02:18592782..18592806 (25 bp)
GTGCTGTGCTACGACGCAAGGAAGA
LOC_Os02g31110
OsAffx.12305.1.S1_at--646--5391Chr02:18592830..18592854 (25 bp)
GAAGCAGCGCCGTTGATGTTCTTTG
LOC_Os02g31110
OsAffx.12305.1.S1_at--263--8291Chr02:18592854..18592878 (25 bp)
GGCTTGCTCAGTGTTCGATGGTTTT
LOC_Os02g31110
OsAffx.12305.1.S1_at--880--7271Chr02:18592893..18592917 (25 bp)
GGGTTAGAACGTATCGCGACCGTAT
LOC_Os02g31110
OsAffx.12305.1.S1_at--767--6891Chr02:18592903..18592927 (25 bp)
GTATCGCGACCGTATCGGGAATTTT
LOC_Os02g31110
OsAffx.12305.1.S1_at--661--5511Chr02:18592948..18592972 (25 bp)
GAAAACAACCGATACGTACGAGATA
LOC_Os02g31110
OsAffx.12305.1.S1_at--691--7591Chr02:18592980..18593004 (25 bp)
GGGCATATCCGATACTTATCCATAT
LOC_Os02g31110
OsAffx.12305.1.S1_at--388--251Chr02:18593001..18593025 (25 bp)
ATATCCGATATGAATACGTGGCCTG
LOC_Os02g31110
OsAffx.12305.1.S1_at--205--3091Chr02:18593013..18593037 (25 bp)
AATACGTGGCCTGGGAGGCGTATCC
LOC_Os02g31110
OsAffx.12305.1.S1_at--124--4631NONE
GCGTATCCAGGAATAGGGTCAATCT
NONE
OsAffx.12305.1.S1_at--588--5231Chr02:18595150..18595174 (25 bp)
GAATAGGGTCAATCTGCAGCAGCAA
LOC_Os02g31110
Target Sequence 
GTGCTGTGCTACGACGCAAGGAAGAGAGCGAGCTGAGTTGGGGTTGGGGAAGCAGCGCCGTTGATGTTCTTTGGCTTGCT
CAGTGTTCGATGGTTTTGATCGATGATTTTAGGGTTAGAACGTATCGCGACCGTATCGGGAATTTTTTTTATTATCTGAA
AATCGTGAAAACAACCGATACGTACGAGATACGTATCGGGGCATATCCGATACTTATCCATATCCGATATGAATACGTGG
CCTGGGAGGCGTATCCAGGAATAGGGTCAATCTGCAGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis