Browse Element(s) Details


OsAffx.16980.1.S1_at

Description tigr:9636.m01337
TID=OsAffx.16980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1353011/11hypothetical protein
LOC_Os02g311291/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13480OsAffx.29178.1.S1_at11/118+8016704..8017150hypothetical protein
LOC_Os08g13490OsAffx.16979.1.S1_at9/118+8021513..8023740hypothetical protein
LOC_Os08g13490Os.18665.1.S1_at1/118+8021513..8023740hypothetical protein
LOC_Os08g13500OsAffx.1647.1.S1_at2/118+8025895..8028825retrotransposon protein, putative, unclassified
LOC_Os08g13510OsAffx.22722.1.S1_x_at1/118+8029497..8032049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13520NANA8+8032317..8034364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13530OsAffx.16980.1.S1_at11/118+8040618..8041476hypothetical protein
LOC_Os08g13540OsAffx.1646.1.S1_x_at1/118+8043022..8045838retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13550NANA8+8047078..8047811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13560OsAffx.20565.1.S1_at2/118+8049459..8051934retrotransposon protein, putative, unclassified
LOC_Os08g13570Os.53817.1.S1_at11/118+8054974..8057148Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g13580OsAffx.20171.1.S1_at2/118+8060577..8063640transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16980.1.S1_at--951--7777Chr06:4608685..4608737 (25 bp)
GGTGCCGCCTCCCTTGTGCCGGTTG
NONE
OsAffx.16980.1.S1_at--1061--10331Chr08:8040933..8040957 (25 bp)
TTCTCAACCGGCACAGAATACCTTT
LOC_Os08g13530
OsAffx.16980.1.S1_at--358--3751Chr08:8040931..8040955 (25 bp)
CTCAACCGGCACAGAATACCTTTTC
LOC_Os08g13530
OsAffx.16980.1.S1_at--905--1412Chr04:6992567..6992586 (20 bp)
AGAATACCTTTTCTGTAGTAGTGAA
NONE
OsAffx.16980.1.S1_at--964--3091Chr08:8040917..8040941 (25 bp)
AATACCTTTTCTGTAGTAGTGAAAG
LOC_Os08g13530
OsAffx.16980.1.S1_at--368--2291Chr08:8040896..8040920 (25 bp)
AAAGGTGGTTTATATGGGTCATAGA
LOC_Os08g13530
OsAffx.16980.1.S1_at--233--271Chr08:8040885..8040909 (25 bp)
ATATGGGTCATAGAAGGTGGCTTCC
LOC_Os08g13530
OsAffx.16980.1.S1_at--1023--7811Chr08:8040880..8040904 (25 bp)
GGTCATAGAAGGTGGCTTCCGCTAT
LOC_Os08g13530
OsAffx.16980.1.S1_at--836--7531Chr08:8040652..8040893 (25 bp)
GTGGCTTCCGCTATGTCACATATTT
LOC_Os08g13530
OsAffx.16980.1.S1_at--555--8291Chr08:8040650..8040891 (25 bp)
GGCTTCCGCTATGTCACATATTTAT
LOC_Os08g13530
OsAffx.16980.1.S1_at--97--3651Chr08:8040648..8040889 (25 bp)
CTTCCGCTATGTCACATATTTATTT
LOC_Os08g13530
Target Sequence 
GGTGCCGCCTCCCTTGTGCCGGTTGGGAAAACCGGTATAGAAGGGGGTTTCTCAACCGGCACAGAATACCTTTTCTGTAG
TAGTGAAAGGTGGTTTATATGGGTCATAGAAGGTGGCTTCCGCTATGTCACATATTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis