Browse Element(s) Details


Os.54791.1.S1_at

Description gb:AK106777.1
DB_XREF= gi:32991986
TID=Os.54791.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G12, full insert sequence.
FL= gb:AK106777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5300011/11LysM domain GPI-anchored protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52970OsAffx.22699.1.S1_x_at2/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52970OsAffx.8279.1.S1_at1/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52980NANA2+32405671..32408867hypothetical protein
LOC_Os02g52990Os.49319.1.S1_at11/112+32412624..32413492Auxin responsive protein, expressed
LOC_Os02g53000Os.54791.1.S1_at11/112+32420454..32423529LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os02g53010NANA2+32435603..32436459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53020Os.27345.1.S1_at1/112+32442024..32445412transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54791.1.S1_at--382--7051Chr02:32421453..32421477 (25 bp)
GTAATGTAAGCGCTCGTTCCACCAG
LOC_Os02g53000
Os.54791.1.S1_at--1017--2971Chr02:32421418..32421442 (25 bp)
AATGTTTCTTCTTGTAGCTACGGAG
LOC_Os02g53000
Os.54791.1.S1_at--180--8191Chr02:32420999..32421406 (25 bp)
GGAACCATTACCACATTGCTGAGCA
LOC_Os02g53000
Os.54791.1.S1_at--513--3471Chr02:32421280..32421304 (25 bp)
CAGGTCTTCAATCCAGATGTCCAGG
LOC_Os02g53000
Os.54791.1.S1_at--830--5411Chr02:32420821..32420845 (25 bp)
GAACCATGATTCAACGTTTCTCCCG
LOC_Os02g53000
Os.54791.1.S1_at--670--151Chr02:32420794..32420818 (25 bp)
ATTATCGGCACCTGGACCTGCAGAA
LOC_Os02g53000
Os.54791.1.S1_at--857--2911Chr02:32420723..32420747 (25 bp)
AAGGAGGGTCTTTCACACTGCCCAA
LOC_Os02g53000
Os.54791.1.S1_at--1093--5391Chr02:32420672..32420696 (25 bp)
GAAGCGTTTCAGAGGCTCCTTGGAT
LOC_Os02g53000
Os.54791.1.S1_at--623--671Chr02:32420649..32420673 (25 bp)
ATGAACAAGCCGCATCAGATCCTGT
LOC_Os02g53000
Os.54791.1.S1_at--447--10331Chr02:32420620..32420644 (25 bp)
TTTCATCTTGTGTCTACTACTTCTC
LOC_Os02g53000
Os.54791.1.S1_at--1136--2011Chr02:32420605..32420629 (25 bp)
ACTACTTCTCTACTCGCAGATGTGA
LOC_Os02g53000
Target Sequence 
GTAATGTAAGCGCTCGTTCCACCAGTGCAGGCTGCAATGTTTCTTCTTGTAGCTACGGAGGTTTTGTTAATGGAACCATT
ACCACATTGCTGAGCACAGGTCTTCAATCCAGATGTCCAGGACCACATCAGTTCCCTGAACTCACTGAACCCCCTACCAC
GGTGAACCATGATTCAACGTTTCTCCCGCCATTATCGGCACCTGGACCTGCAGAAGCCGGCGGCGCCATTCCCCCTCCGA
ACTCAGGCTCACCATCAGTGCAAGGAGGGTCTTTCACACTGCCCAAAGTATCCACTGCAAATGGCCCTGCCGGAAGCGTT
TCAGAGGCTCCTTGGATGAACAAGCCGCATCAGATCCTGTCAAGTTTCATCTTGTGTCTACTACTTCTCTACTCGCAGAT
GTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis