Browse Element(s) Details


Os.54820.1.S1_at

Description gb:AK106833.1
DB_XREF= gi:32992042
TID=Os.54820.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F12, full insert sequence.
FL= gb:AK106833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4280011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42750NANA2+25703665..25709364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g42760NANA2+25712955..25714013hypothetical protein
LOC_Os02g42770Os.51348.1.S1_x_at3/112+25714631..25716884retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g42780Os.55101.1.S1_at11/112+25718087..25720213Protein kinase domain containing protein, expressed
LOC_Os02g42790OsAffx.12461.1.S1_at11/112+25721609..25723542oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g42800Os.54820.1.S1_at11/112+25724653..25726364expressed protein
LOC_Os02g42810Os.10767.1.S1_at11/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42810OsAffx.12462.1.S1_s_at11/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42810Os.10767.2.S1_x_at10/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42820OsAffx.12463.1.S1_at11/112+25733814..25735183LIM domain containing protein, expressed
LOC_Os02g42830NANA2+25740246..25740824retrotransposon protein, putative, unclassified
LOC_Os02g42840NANA2+25741057..25741821retrotransposon protein, putative, LINE subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54820.1.S1_at--160--1991Chr02:25725866..25725890 (25 bp)
ACTGCTGCGCCTATGGATATCCACA
LOC_Os02g42800
Os.54820.1.S1_at--657--2471Chr02:25725939..25725963 (25 bp)
AACACGGTGTTCAACAACCTGCGAC
LOC_Os02g42800
Os.54820.1.S1_at--125--711Chr02:25726043..25726067 (25 bp)
ATGAGGGTACGATTCCCCGATGGCT
LOC_Os02g42800
Os.54820.1.S1_at--320--8591Chr02:25726071..25726095 (25 bp)
TGGTCACCAAAGAGTTCGGCTGCAA
LOC_Os02g42800
Os.54820.1.S1_at--911--3131Chr02:25726118..25726142 (25 bp)
AATTACTGCAGATCGGTGCTCCATG
LOC_Os02g42800
Os.54820.1.S1_at--592--2891Chr02:25726209..25726233 (25 bp)
AAGGTGACCACTCGTTTGAAGATTT
LOC_Os02g42800
Os.54820.1.S1_at--605--2811Chr02:25726227..25726251 (25 bp)
AAGATTTGGGCCTGAACTGCGCGAC
LOC_Os02g42800
Os.54820.1.S1_at--550--5471Chr02:25726240..25726264 (25 bp)
GAACTGCGCGACTGTCTCAGTAATT
LOC_Os02g42800
Os.54820.1.S1_at--177--10031Chr02:25726274..25726298 (25 bp)
TAGAACGAATTACTCCTCCTACTAC
LOC_Os02g42800
Os.54820.1.S1_at--732--271Chr02:25726303..25726327 (25 bp)
ATATGGTTCATTGGTCCTTGTATCA
LOC_Os02g42800
Os.54820.1.S1_at--613--1251Chr02:25726327..25726351 (25 bp)
AGATTCTCGGATTCATCACTATGGA
LOC_Os02g42800
Target Sequence 
ACTGCTGCGCCTATGGATATCCACAATGTTCAAGAACCAGACACTGCTGCGCCTGCACCTGCACCTGTGGTCGAACACGG
TGTTCAACAACCTGCGACTGCCGGCGCCGGCGCACAGCAACCAGCAGATGAACAAGATGATGATGACCAGCCGATGGAAG
GTGAGAAGATGTACAGGATGAGGGTACGATTCCCCGATGGCTCTGTGGTCACCAAAGAGTTCGGCTGCAAGCGGAGGGTG
GCAGTGCTCTTCAATTACTGCAGATCGGTGCTCCATGACAAGCCGCAGGCGTTCAAGATCAAGAGGTTGCTCGGCGTCGG
CGGAGCTTTCCACGAGTTGCCCCAAGGTGACCACTCGTTTGAAGATTTGGGCCTGAACTGCGCGACTGTCTCAGTAATTT
TGGATACTTAGAACGAATTACTCCTCCTACTACTACTATATGGTTCATTGGTCCTTGTATCAGATTCTCGGATTCATCAC
TATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis