Browse Element(s) Details


OsAffx.12461.1.S1_at

Description tigr:9630.m04103
TID=OsAffx.12461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4279011/11oxidoreductase, short chain dehydrogenase/reductase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42750NANA2+25703665..25709364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g42760NANA2+25712955..25714013hypothetical protein
LOC_Os02g42770Os.51348.1.S1_x_at3/112+25714631..25716884retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g42780Os.55101.1.S1_at11/112+25718087..25720213Protein kinase domain containing protein, expressed
LOC_Os02g42790OsAffx.12461.1.S1_at11/112+25721609..25723542oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os02g42800Os.54820.1.S1_at11/112+25724653..25726364expressed protein
LOC_Os02g42810Os.10767.1.S1_at11/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42810OsAffx.12462.1.S1_s_at11/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42810Os.10767.2.S1_x_at10/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42820OsAffx.12463.1.S1_at11/112+25733814..25735183LIM domain containing protein, expressed
LOC_Os02g42830NANA2+25740246..25740824retrotransposon protein, putative, unclassified
LOC_Os02g42840NANA2+25741057..25741821retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12461.1.S1_at--1078--5911Chr02:25722240..25722264 (25 bp)
GAGCAGGATCCCAAGGCAAGTTTTC
LOC_Os02g42790
OsAffx.12461.1.S1_at--498--6771Chr02:25722800..25722824 (25 bp)
GTTACAGATTGCCTGATGCCACTCC
LOC_Os02g42790
OsAffx.12461.1.S1_at--493--2211Chr02:25722874..25723179 (25 bp)
ACAACTCCAGTTCATCTCGAATGAG
LOC_Os02g42790
OsAffx.12461.1.S1_at--361--6471Chr02:25723207..25723231 (25 bp)
GATAACCTGTCGGATGAGAAGCTCA
LOC_Os02g42790
OsAffx.12461.1.S1_at--424--3251Chr02:25723294..25723318 (25 bp)
CAACCAGTGGTATCAGCATATGCAG
LOC_Os02g42790
OsAffx.12461.1.S1_at--67--2591Chr02:25723326..25723350 (25 bp)
AACGTTGGTCAATGCCTACAGTAGG
LOC_Os02g42790
OsAffx.12461.1.S1_at--873--4451Chr02:25723339..25723363 (25 bp)
GCCTACAGTAGGCTCCTTGCTAAAA
LOC_Os02g42790
OsAffx.12461.1.S1_at--1008--2431Chr02:25723360..25723384 (25 bp)
AAAAGGCACCCATCGCTGGAAGTAT
LOC_Os02g42790
OsAffx.12461.1.S1_at--291--1191Chr02:25723380..25723404 (25 bp)
AGTATGCTGCGTCAATCCAGGTTTC
LOC_Os02g42790
OsAffx.12461.1.S1_at--119--3031Chr02:25723459..25723483 (25 bp)
AATGCGCCAGTCAGATTGGCTTTGC
LOC_Os02g42790
OsAffx.12461.1.S1_at--34--2691Chr02:25723487..25723511 (25 bp)
AAGCGTGCAGTGACTCGTGCCTTTA
LOC_Os02g42790
Target Sequence 
GAGCAGGATCCCAAGGCAAGTTTTCAAGAAGATCTAATGGGTTTTCTGAATAGTTATATGGGAAGCTTGCAACAAAATTA
TGAGATGGCCAAGGAATGTCTGGAAATAAATTTCTATGGCACAAAGGATGTTACAGATTGCCTGATGCCACTCCTCCTTC
TATCCAATTCAGGAAAAGTGATAAATCTTACCTCAAAAATTTCACAACTCCAGTTCATCTCGAATGAGGGGGTCATAAAG
GTGCTAAGTGACATTGATAACCTGTCGGATGAGAAGCTCAAGGATGTGGCCAGCATTTTCTTGAAAGATTTCAAGGATGG
AAATCTAGAAGCACATGGCTGGCAACCAGTGGTATCAGCATATGCAGTGTCCAAAACGTTGGTCAATGCCTACAGTAGGC
TCCTTGCTAAAAGGCACCCATCGCTGGAAGTATGCTGCGTCAATCCAGGTTTCGTGAAGACTGACATGAACTATGGCATT
GGATTAATTTCAGTAGAGGAAGGAGCAAATGCGCCAGTCAGATTGGCTTTGCAGGAAGCGTGCAGTGACTCGTGCCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis