Browse Element(s) Details


Os.54865.1.S1_at

Description gb:AK106952.1
DB_XREF= gi:32992161
TID=Os.54865.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E05, full insert sequence.
FL= gb:AK106952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3095010/11Taxane 10-beta-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30920Os.56089.1.S1_at1/117+18302725..18303132transposon protein, putative, unclassified
LOC_Os07g30930OsAffx.16500.1.S1_at11/117+18307988..18309961pentatricopeptide, putative, expressed
LOC_Os07g30940Os.5232.1.A1_at11/117+18320091..18322980expressed protein
LOC_Os07g30950Os.54865.1.S1_at10/117+18327264..18329088Taxane 10-beta-hydroxylase, putative, expressed
LOC_Os07g30960OsAffx.5487.1.S1_at10/117+18330234..18332264CTF2A, putative, expressed
LOC_Os07g30970Os.146.1.S1_at11/117+18333178..18335793Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54865.1.S1_at--177--10671Chr07:18328544..18328568 (25 bp)
TTCCACGAGCCGACCAAGTTCGAGC
LOC_Os07g30950
Os.54865.1.S1_at--892--5371Chr07:18328732..18328756 (25 bp)
GAAGAACACGTTTCTCAGGGACCCG
LOC_Os07g30950
Os.54865.1.S1_at--1022--1851Chr07:18328739..18328763 (25 bp)
ACGTTTCTCAGGGACCCGATGCCGA
LOC_Os07g30950
Os.54865.1.S1_at--623--9051Chr07:18328811..18328835 (25 bp)
TGCTAAGCCGCACCATCCGTTATCA
LOC_Os07g30950
Os.54865.1.S1_at--932--9571Chr07:18328843..18328867 (25 bp)
TCTTCCTCCGTATCTGTTATGGTGC
LOC_Os07g30950
Os.54865.1.S1_at--1145--9271Chr07:18328849..18328873 (25 bp)
TCCGTATCTGTTATGGTGCTTCCCC
LOC_Os07g30950
Os.54865.1.S1_at--145--10051Chr07:18328909..18328933 (25 bp)
TAGTATAATTACGACGCTTCCCGCA
LOC_Os07g30950
Os.54865.1.S1_at--679--4111Chr07:18328923..18328947 (25 bp)
CGCTTCCCGCAAGTTTTCTTAATAT
LOC_Os07g30950
Os.54865.1.S1_at--1043--6991Chr07:18328985..18329009 (25 bp)
GTACTGTAACTGCATTGTAACTTAT
LOC_Os07g30950
Os.54865.1.S1_at--738--7031Chr07:18329056..18329080 (25 bp)
GTACACTTAAACGATGCGATGGCCA
LOC_Os07g30950
Os.54865.1.S1_at--303--4631Chr07:18329071..18329095 (25 bp)
GCGATGGCCACAAATCCGAAAATTT
NONE
Target Sequence 
TTCCACGAGCCGACCAAGTTCGAGCCGTCGCGGTTCGACGGCGCGGCGGCGGCGGCGGCGTACTCGTTCGTGCCGTTCGG
CGGCGGGCCGCGGATCTGCCCCGGGATGGAGCTCGCGAGGGTGGAGACGCTGGTGACGGCGCACTACCTGGTGAGGCATT
TCAGGTGGAAGCTCTGCCTCGGGGAGGAGAAGAACACGTTTCTCAGGGACCCGATGCCGACGCCGCACGACGGCCTCCCC
GTCGAGCTCGACCACATCGCTCCTCTCTGCTAAGCCGCACCATCCGTTATCACGCTTCCTCTTCCTCCGTATCTGTTATG
GTGCTTCCCCCAAGTTTTTTTTCTTTTTTTTCAGATTTAGTTATAGTATAATTACGACGCTTCCCGCAAGTTTTCTTAAT
ATAACTATAATATAATTGAGATGTAAATGTATTATAGTTGTACTGTAACTGCATTGTAACTTATAGCAAAACTGTACAAA
TTTGTTTCTAGAAATTTTTCTTTCTTTCATGTACACTTAAACGATGCGATGGCCACAAATCCGAAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis