Browse Element(s) Details


Os.54874.1.S1_at

Description gb:AK106970.1
DB_XREF= gi:32992179
TID=Os.54874.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G03, full insert sequence.
FL= gb:AK106970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2704010/11GEX1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27010Os.49849.1.S1_at11/119+16421289..16424217Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os09g27020Os.51501.1.S2_x_at1/119+16434083..16434979hypothetical protein
LOC_Os09g27030Os.7860.1.S1_at9/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27030OsAffx.4696.1.S1_at1/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005887cellular_componentintegral to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54874.1.S1_at--55--3251Chr09:16446272..16446296 (25 bp)
CAAGCTCGGAGCTGACGACATCGAC
LOC_Os09g27040
Os.54874.1.S1_at--510--3891Chr09:16446305..16446329 (25 bp)
CTGGGTCATATCCAAGGTGTTCCTT
LOC_Os09g27040
Os.54874.1.S1_at--1122--7411Chr09:16446321..16446345 (25 bp)
GTGTTCCTTGTCAGATCAGTGTTCC
LOC_Os09g27040
Os.54874.1.S1_at--1116--2051Chr09:16446350..16446374 (25 bp)
ACTTGCCACCGTTCAGATGTTGCAT
LOC_Os09g27040
Os.54874.1.S1_at--482--6671Chr09:16446368..16446392 (25 bp)
GTTGCATGCCATATTCACATTCAGG
LOC_Os09g27040
Os.54874.1.S1_at--1140--7651Chr09:16446496..16446520 (25 bp)
GGGATTACGAACTACTCAACCATCA
LOC_Os09g27040
Os.54874.1.S1_at--1007--6231NONE
GATGGACTACTCGTGGGTGCTCGAC
NONE
Os.54874.1.S1_at--1119--7511Chr09:16446669..16446693 (25 bp)
GTGGACAGCAATGCGGATCCGAGCT
LOC_Os09g27040
Os.54874.1.S1_at--505--5971Chr09:16446780..16446804 (25 bp)
GAGAACTCCATCACGACGTCGGCTG
LOC_Os09g27040
Os.54874.1.S1_at--166--2211Chr09:16446814..16446838 (25 bp)
ACAACCTGCGGCCACGGAGTAGTTA
LOC_Os09g27040
Os.54874.1.S1_at--890--6031Chr09:16446873..16446897 (25 bp)
GAGATCGCTTTGTGCGCGTAATACT
LOC_Os09g27040
Target Sequence 
CAAGCTCGGAGCTGACGACATCGACAAGCAATTCTGGGTCATATCCAAGGTGTTCCTTGTCAGATCAGTGTTCCTTGCAC
TTGCCACCGTTCAGATGTTGCATGCCATATTCACATTCAGGGATTACGAACTACTCAACCATCACCTGCTCCAGACGCTG
GTCGAGAAGGTCCGGGCGCTGGAGGAAACCGCCGCCGCCGGCGAGAAGATGCTGCCCTACGGCGGCGGCGGCGCGGAGAG
CGAGAGGAGCCTGATGGACTACTCGTGGGTGCTCGACGAGTTGGCCGACGAGGTGGACAGCAATGCGGATCCGAGCTACG
CCTTGCCGGGGGATGAGCAGCGGCAGGTGGCGGTGGTCGCTCCTCGCCGGAGGCACTGCGCCTCGCCGGAGGAGGTCGTC
GGCGAGAACTCCATCACGACGTCGGCTGGCCGGAGGTACAACCTGCGGCCACGGAGTAGTTACAGGCAGACGTGAGTTTG
GTTGGAGAATTAACTGGAGATCGCTTTGTGCGCGTAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis