Browse Element(s) Details


Os.54924.1.S1_at

Description gb:AK107113.1
DB_XREF= gi:32992322
TID=Os.54924.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-123-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-123-A08, full insert sequence.
FL= gb:AK107113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3313410/11expressed protein
LOC_Os03g277101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33120Os.51584.1.S1_at11/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33120Os.11468.1.S1_at10/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33134Os.54924.1.S1_at10/1111+19113504..19114166expressed protein
LOC_Os11g33150Os.46808.2.S1_x_at4/1111+19116876..19117982hypothetical protein
LOC_Os11g33160NANA11+19126557..19127048hypothetical protein
LOC_Os11g33170OsAffx.19139.1.S1_at11/1111+19127282..19127959hypothetical protein
LOC_Os11g33180NANA11+19128158..19130025F-box domain containing protein
LOC_Os11g33190Os.56360.1.S1_at9/1111+19133801..19136541F-box domain containing protein, expressed
LOC_Os11g33200OsAffx.19140.1.S1_x_at11/1111+19137846..19138231hypothetical protein
LOC_Os11g33200OsAffx.19140.1.S1_at10/1111+19137846..19138231hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54924.1.S1_at--413--7731Chr11:19113790..19113814 (25 bp)
GGTGGCAGCAGTGGTCTCCCAGCCT
LOC_Os11g33134
Os.54924.1.S1_at--1053--1672Chr11:19113770..19113794 (25 bp)
AGCCTCGGGCGTTTGGATCCGTCGT
LOC_Os11g33134
Os.54924.1.S1_at--1131--6611Chr11:19113688..19113712 (25 bp)
GTTGGATTAGGGTTCCAGCCTTCCA
LOC_Os11g33134
Os.54924.1.S1_at--146--10691Chr11:19113668..19113692 (25 bp)
TTCCAGGGCGTCTTTTGATTTTCTT
LOC_Os11g33134
Os.54924.1.S1_at--770--6537Chr11:19274436..19274455 (20 bp)
GATTTTTTATTTTCTCGTGCACGTG
NONE
Os.54924.1.S1_at--201--9511Chr11:19113625..19113649 (25 bp)
TCTCGTGCACGTGATTTTCGTGTGC
LOC_Os11g33134
Os.54924.1.S1_at--74--9151NONE
TGCGGGTGTGTCAACTGCACGAAGA
NONE
Os.54924.1.S1_at--984--7931Chr11:19113573..19113597 (25 bp)
GGATTTTCTCAGACACTTTGTTTCA
LOC_Os11g33134
Os.54924.1.S1_at--1054--5611Chr11:19113562..19113586 (25 bp)
GACACTTTGTTTCAGACGGGTGGAA
LOC_Os11g33134
Os.54924.1.S1_at--927--8191Chr11:19113541..19113565 (25 bp)
GGAAGATCCACACCTGAAAATCGCT
LOC_Os11g33134
Os.54924.1.S1_at--817--5511Chr11:19113526..19113550 (25 bp)
GAAAATCGCTTTCGGCTGCACGGAA
LOC_Os11g33134
Target Sequence 
GGTGGCAGCAGTGGTCTCCCAGCCTCGGGCGTTTGGATCCGTCGTGGGCGACTGCGGGGATGACGGCGGCGGGCCTCGTG
CTGGCTGGCAACGGCGGCGGTAGTTGGATTAGGGTTCCAGCCTTCCAGGGCGTCTTTTGATTTTCTTTTTTTTGATTTTT
TATTTTCTCGTGCACGTGATTTTCGTGTGCGGGTGTGTCAACTGCACGAAGAAAATTGGATTTTCTCAGACACTTTGTTT
CAGACGGGTGGAAGATCCACACCTGAAAATCGCTTTCGGCTGCACGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis