Browse Element(s) Details


Os.51584.1.S1_at

Description gb:AK063113.1
DB_XREF= gi:32973131
TID=Os.51584.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D10, full insert sequence.
FL= gb:AK063113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3312011/11respiratory burst oxidase protein D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33080OsAffx.22940.5.S1_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.2.S1_s_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080Os.35344.3.S1_x_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.5.S1_x_at10/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.1.S1_s_at10/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.3.S1_x_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080Os.35344.18.S1_x_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.2.S1_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.31552.2.S1_at1/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33090Os.23152.1.S1_at11/1111+19070910..19074968amidase family protein, putative, expressed
LOC_Os11g33100OsAffx.19137.1.S1_s_at11/1111+19078857..19084038expressed protein
LOC_Os11g33110OsAffx.19138.1.S1_at11/1111+19084161..19084993Germin-like protein subfamily 3 member 4 precursor, putative, expressed
LOC_Os11g33120Os.51584.1.S1_at11/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33120Os.11468.1.S1_at10/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33134Os.54924.1.S1_at10/1111+19113504..19114166expressed protein
LOC_Os11g33150Os.46808.2.S1_x_at4/1111+19116876..19117982hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51584.1.S1_at--352--791Chr11:19091628..19091652 (25 bp)
ATGTGATGCTGACCATGTGACCCCA
LOC_Os11g33120
Os.51584.1.S1_at--1071--7131Chr11:19091505..19091529 (25 bp)
GTCTTCTCAAGGGTACTCCGCTAGT
LOC_Os11g33120
Os.51584.1.S1_at--531--4331Chr11:19091479..19091503 (25 bp)
CCATCTCACCATCTATTTGTCACAA
LOC_Os11g33120
Os.51584.1.S1_at--148--3071Chr11:19091455..19091479 (25 bp)
AATCTCACAATCTTATCCAACCTTA
LOC_Os11g33120
Os.51584.1.S1_at--116--9811Chr11:19091442..19091466 (25 bp)
TATCCAACCTTAAGCCCCTACAAAT
LOC_Os11g33120
Os.51584.1.S1_at--724--10211Chr11:19091397..19091421 (25 bp)
TATTATCATCGCTGTCACGGTTACT
LOC_Os11g33120
Os.51584.1.S1_at--764--4131Chr11:19091388..19091412 (25 bp)
CGCTGTCACGGTTACTATCACTAAT
LOC_Os11g33120
Os.51584.1.S1_at--196--151Chr11:19091299..19091323 (25 bp)
ATTATGTTTTTCAGGTCTGCCGGCC
LOC_Os11g33120
Os.51584.1.S1_at--203--3431Chr11:19091220..19091244 (25 bp)
CATGACCAACCCAAGGTGAGAACAC
LOC_Os11g33120
Os.51584.1.S1_at--550--7371Chr11:19091205..19091229 (25 bp)
GTGAGAACACAACCCCGAACGCAAA
LOC_Os11g33120
Os.51584.1.S1_at--39--3151Chr11:19091146..19091170 (25 bp)
AATTCCCCGCATTTCCCTCAAATGT
LOC_Os11g33120
Target Sequence 
ATGTGATGCTGACCATGTGACCCCACCTGCAGGCACCCATTCTCCATCACGTCGGCCCCACAGGACGACTACGTCAGCGT
CCACATCAGGACGCTCGGTGACTGGACACGGGAGCTTAAGAACGTCTTCTCAAGGGTACTCCGCTAGTCCCATCTCACCA
TCTATTTGTCACAAATCTCACAATCTTATCCAACCTTAAGCCCCTACAAATCTCCTCCTCATCATCATTATTATTATCAT
CGCTGTCACGGTTACTATCACTAATATTTTAGCTTAACAAATGACTTGTACATTTTTTTGCAAAGTAAAAAAGAATTAAT
CATGACAATATTATGTTTTTCAGGTCTGCCGGCCACCGACGGAAGGGAAGAGCGGGTTGCTCCGGGCGGAGTACGACCGC
GACGGCGCCATGACCAACCCAAGGTGAGAACACAACCCCGAACGCAAAACAATCCCCCCTTCTTCTTCTTCCCCGCTACG
AAAATTCCCCGCATTTCCCTCAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis