Browse Element(s) Details


OsAffx.19137.1.S1_s_at

Description tigr:9639.m03015
TID=OsAffx.19137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3310011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33080OsAffx.22940.5.S1_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.2.S1_s_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080Os.35344.3.S1_x_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.5.S1_x_at10/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.1.S1_s_at10/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.3.S1_x_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080Os.35344.18.S1_x_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.2.S1_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.31552.2.S1_at1/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33090Os.23152.1.S1_at11/1111+19070910..19074968amidase family protein, putative, expressed
LOC_Os11g33100OsAffx.19137.1.S1_s_at11/1111+19078857..19084038expressed protein
LOC_Os11g33110OsAffx.19138.1.S1_at11/1111+19084161..19084993Germin-like protein subfamily 3 member 4 precursor, putative, expressed
LOC_Os11g33120Os.51584.1.S1_at11/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33120Os.11468.1.S1_at10/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19137.1.S1_s_at--121--9171Chr11:19083456..19083480 (25 bp)
TGCCCTTGTTATTCCTGAAGAGCTT
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--179--7771Chr11:19083566..19083590 (25 bp)
GGTGACCATCACAATTTCTTGCATA
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--430--6451Chr11:19083639..19083663 (25 bp)
GATCAAGATTATTCCACATTGGTCA
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--900--1291Chr11:19083720..19083744 (25 bp)
AGATGCGCAGTCAGCTACTGTCTTG
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--123--9931Chr11:19083735..19083759 (25 bp)
TACTGTCTTGTTTCTGCCATCAAGC
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--311--651Chr11:19083777..19083801 (25 bp)
ATGCAGATGTTTCACCTTGCAAACA
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--780--5331Chr11:19083807..19083831 (25 bp)
GAAGTTCATATGCTGTACATCTAAG
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--253--9931Chr11:19083841..19083865 (25 bp)
TACGGTGGTCTAGGATTTTCTTGTT
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--153--10231Chr11:19083889..19083913 (25 bp)
TTTGATTTCCTTCCCTACTTGTACT
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--422--9291Chr11:19083900..19083924 (25 bp)
TCCCTACTTGTACTGAACCCATATA
LOC_Os11g33100
OsAffx.19137.1.S1_s_at--924--5191Chr11:19083935..19083959 (25 bp)
GAATTCAGTGTTCTAATGGACCAGA
LOC_Os11g33100
Target Sequence 
TGCCCTTGTTATTCCTGAAGAGCTTAAAAATTCATCTACTAATGGAAAGGCTAATGTGGATGACAAGGCAGTGTCTGAAA
ATACCAACTCTGGGGAAACTAGGAAAAGGAGGTGACCATCACAATTTCTTGCATATTACTGTGAGGAGCTACTACGAATT
ATCAAACATTTAGAGTAGATGCAGATCAAGATTATTCCACATTGGTCAATGACTATAGTAAACTATGTTGTCTGTTTCAT
GCCATTGTTTTGGGGGCATTTAGCAGATGCGCAGTCAGCTACTGTCTTGTTTCTGCCATCAAGCTTTTCTTTTTCTGACA
CATGCAGATGTTTCACCTTGCAAACATGGTAGAAGTTCATATGCTGTACATCTAAGTTGGGTAGTTACGGTGGTCTAGGA
TTTTCTTGTTAAATTATATCTAAGGAAACCGGTTTTGATTTCCTTCCCTACTTGTACTGAACCCATATATGACTTGGTAG
AATTCAGTGTTCTAATGGACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19137.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis