Browse Element(s) Details


OsAffx.19138.1.S1_at

Description tigr:9639.m03016
TID=OsAffx.19138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=germin-like protein subfamily 3 member 4 precursor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3311011/11Germin-like protein subfamily 3 member 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33080OsAffx.22940.5.S1_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.2.S1_s_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080Os.35344.3.S1_x_at11/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.5.S1_x_at10/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.1.S1_s_at10/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.3.S1_x_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080Os.35344.18.S1_x_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.22940.2.S1_at9/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33080OsAffx.31552.2.S1_at1/1111+19062593..19070142transposon protein, putative, Mutator sub-class
LOC_Os11g33090Os.23152.1.S1_at11/1111+19070910..19074968amidase family protein, putative, expressed
LOC_Os11g33100OsAffx.19137.1.S1_s_at11/1111+19078857..19084038expressed protein
LOC_Os11g33110OsAffx.19138.1.S1_at11/1111+19084161..19084993Germin-like protein subfamily 3 member 4 precursor, putative, expressed
LOC_Os11g33120Os.51584.1.S1_at11/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33120Os.11468.1.S1_at10/1111+19087453..19094956respiratory burst oxidase protein D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19138.1.S1_at--1000--8471Chr11:19084457..19084481 (25 bp)
TGGCATTTCAATGGCGCGGACCGAC
LOC_Os11g33110
OsAffx.19138.1.S1_at--414--10651Chr11:19084511..19084535 (25 bp)
TTCCCACCCAAGAGCTTCAGAGATG
LOC_Os11g33110
OsAffx.19138.1.S1_at--638--2871Chr11:19084553..19084577 (25 bp)
AAGTGTGGTGGCAGGCTTCTTTGAC
LOC_Os11g33110
OsAffx.19138.1.S1_at--972--4711Chr11:19084589..19084613 (25 bp)
GCTGTTTCAGAAGACCCTTGCTGAG
LOC_Os11g33110
OsAffx.19138.1.S1_at--1028--7991Chr11:19084616..19084640 (25 bp)
GGATGTCTTCATCTTCCCCAGAGGT
LOC_Os11g33110
OsAffx.19138.1.S1_at--676--1031Chr11:19084637..19084661 (25 bp)
AGGTCTGGTCCATTTCATCATGAAC
LOC_Os11g33110
OsAffx.19138.1.S1_at--575--2531Chr11:19084659..19084683 (25 bp)
AACTATGGTTTTGGCCTTGCGACAA
LOC_Os11g33110
OsAffx.19138.1.S1_at--600--4591Chr11:19084677..19084701 (25 bp)
GCGACAACTTTTTCGGTACTCAACA
LOC_Os11g33110
OsAffx.19138.1.S1_at--1080--1431Chr11:19084705..19084729 (25 bp)
AGAACCCTGGTGTTGTTGGGATCAC
LOC_Os11g33110
OsAffx.19138.1.S1_at--912--6271Chr11:19084736..19084760 (25 bp)
GATGTTTGCGCCAGATTCAGAGGTA
LOC_Os11g33110
OsAffx.19138.1.S1_at--280--6231Chr11:19084772..19084796 (25 bp)
GATGGCCAGGATGTTGAGTTTCAGA
LOC_Os11g33110
Target Sequence 
TGGCATTTCAATGGCGCGGACCGACATCGCGGTCAGCGGGGCGGTGCTTCCCCATTCCCACCCAAGAGCTTCAGAGATGA
TGTTTGTTCACAGTGGAAGTGTGGTGGCAGGCTTCTTTGACACCAAGGGGAAGCTGTTTCAGAAGACCCTTGCTGAGGGG
GATGTCTTCATCTTCCCCAGAGGTCTGGTCCATTTCATCATGAACTATGGTTTTGGCCTTGCGACAACTTTTTCGGTACT
CAACAGTCAGAACCCTGGTGTTGTTGGGATCACCCATGCGATGTTTGCGCCAGATTCAGAGGTAGCTGAAGGGCTGATGG
CCAGGATGTTGAGTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis