Browse Element(s) Details


Os.54937.1.S1_at

Description gb:AK107138.1
DB_XREF= gi:32992347
TID=Os.54937.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C12, full insert sequence.
FL= gb:AK107138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4178011/11ab-hydrolase associated lipase region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41760OsAffx.6108.1.S1_at11/118+26223352..26224461F-box domain containing protein, expressed
LOC_Os08g41770OsAffx.17464.1.S1_at11/118+26234100..26235778hypothetical protein
LOC_Os08g41780Os.54937.1.S1_at11/118+26246575..26251798ab-hydrolase associated lipase region family protein, expressed
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016298molecular_functionlipase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54937.1.S1_at--699--9231Chr08:26246957..26246981 (25 bp)
TCCTTCTTCCGTCGATTTCACTAAA
LOC_Os08g41780
Os.54937.1.S1_at--948--1611Chr08:26246896..26246920 (25 bp)
AGCTGGCATATATTCACTAGTAGTG
LOC_Os08g41780
Os.54937.1.S1_at--918--8271Chr08:26246742..26246766 (25 bp)
GGCATTTGGGCCATATCGATTTTTT
LOC_Os08g41780
Os.54937.1.S1_at--149--10431Chr08:26246698..26246722 (25 bp)
TTATATGTGGCAATGCGGGTCCTGC
LOC_Os08g41780
Os.54937.1.S1_at--587--9131Chr08:26246685..26246709 (25 bp)
TGCGGGTCCTGCCTATTTTAATTTT
LOC_Os08g41780
Os.54937.1.S1_at--695--3211Chr08:26246648..26246672 (25 bp)
CAAACTATGAATGCCATGTAAACGT
LOC_Os08g41780
Os.54937.1.S1_at--657--9831Chr08:26246630..26246654 (25 bp)
TAAACGTTACATAGGCGCTGCGATA
LOC_Os08g41780
Os.54937.1.S1_at--983--891Chr08:26246618..26246642 (25 bp)
AGGCGCTGCGATACATAAACGACCA
LOC_Os08g41780
Os.54937.1.S1_at--821--2591Chr08:26246601..26246625 (25 bp)
AACGACCAGGTCTAAGTGCTAAGCA
LOC_Os08g41780
Os.54937.1.S1_at--874--9751Chr08:26246589..26246613 (25 bp)
TAAGTGCTAAGCAAGCGCCTCGTAG
LOC_Os08g41780
Os.54937.1.S1_at--968--2651Chr08:26246577..26246601 (25 bp)
AAGCGCCTCGTAGCATGAAACAATA
LOC_Os08g41780
Target Sequence 
TCCTTCTTCCGTCGATTTCACTAAAAAAAGGGAAAGAACTGAATAAATCAAAACAAAATATAGCTGGCATATATTCACTA
GTAGTGATTAAGTAGCTAATTAATTTGGAGGTCTGAGAAAATTATATATACTAGTATAGTTGATATACAGTTACATGAAA
GATGATAAATGGAAATGGGACCAAAATTTTACAATAGAATAAGATATAGAGAGATGGCATTTGGGCCATATCGATTTTTT
TTAATTTTTTCTAAGATACTTATATGTGGCAATGCGGGTCCTGCCTATTTTAATTTTATTTTTTTTTTCCAAACTATGAA
TGCCATGTAAACGTTACATAGGCGCTGCGATACATAAACGACCAGGTCTAAGTGCTAAGCAAGCGCCTCGTAGCATGAAA
CAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis