Browse Element(s) Details


Os.10112.1.S1_at

Description gb:AK120448.1
DB_XREF= gi:37990071
TID=Os.10112.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100M19, full insert sequence.
FL= gb:AK062052.1 gb:AK120448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4181011/1160S ribosomal protein L17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41780Os.54937.1.S1_at11/118+26246575..26251798ab-hydrolase associated lipase region family protein, expressed
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10112.1.S1_at--894--2711Chr08:26274182..26274206 (25 bp)
AAGCAGGCAATTCCCTTCAGAAGGT
LOC_Os08g41810
Os.10112.1.S1_at--275--3851Chr08:26274136..26274160 (25 bp)
CTGCACAAGTGAAGTCTCGCCAATC
LOC_Os08g41810
Os.10112.1.S1_at--306--2271Chr08:26274086..26274110 (25 bp)
AAATCAGCCAGGTTCATTTTGGATC
LOC_Os08g41810
Os.10112.1.S1_at--211--3351Chr08:26273742..26273766 (25 bp)
CACGTCGAGCTTATCTTGTCAGAGA
LOC_Os08g41810
Os.10112.1.S1_at--72--1431Chr08:26273402..26273726 (25 bp)
AGAAAGAGCCTGAAACCACCATCGC
LOC_Os08g41810
Os.10112.1.S1_at--974--6191Chr08:26273371..26273395 (25 bp)
GAGGCAGTGAGCTTATCCGCCCAGA
LOC_Os08g41810
Os.10112.1.S1_at--703--4551Chr08:26273353..26273377 (25 bp)
GCCCAGAGTCGCAACTTTAGTTCAT
LOC_Os08g41810
Os.10112.1.S1_at--910--7451Chr08:26273304..26273328 (25 bp)
GTGTGCTATTTATGTTTCTGGTACC
LOC_Os08g41810
Os.10112.1.S1_at--771--9451Chr08:26273288..26273312 (25 bp)
TCTGGTACCATTGTTTAGTCGGAAC
LOC_Os08g41810
Os.10112.1.S1_at--898--8851Chr08:26273253..26273277 (25 bp)
TGATGCTATCCTTTCGTTTGTGTAT
LOC_Os08g41810
Os.10112.1.S1_at--47--3151Chr08:26273214..26273238 (25 bp)
AATTACTTGCCAACTTATCTGCCAA
LOC_Os08g41810
Target Sequence 
AAGCAGGCAATTCCCTTCAGAAGGTACTGTGGAGGCGTGGGCCGTACTGCACAAGTGAAGTCTCGCCAATCAAATGGGCA
GGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATGTTAAANGGC
TTGGATGTCGACAACCTCTTCGTTTCACACATCCAGGTGAACCAAGCCCAGAAGCAGAGACGCCGGACATACCGTGCTCA
TGGACGCATCAATCCTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAG
AGCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTCGCAACTTTAGTTCATTTTCTAGTACTT
TGTTATGGCATTGTGTGCTATTTATGTTTCTGGTACCATTGTTTAGTCGGAACTTGTTAAGTTTGATGCTATCCTTTCGT
TTGTGTATGTTCAAATGGTAACAATTACTTGCCAACTTATCTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis