Browse Element(s) Details


Os.18635.1.S1_at

Description gb:AB071966.1
DB_XREF= gi:22759583
GEN=OsMCP
TID=Os.18635.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18635 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsMCP mRNA for Moco containing protein, complete cds.
PROD=Moco containing protein
FL= gb:AB071966.1 gb:AK068532.1 gb:AK104910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4183011/11Sulfite oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0008134molecular_functiontranscription factor binding
GO:0008482molecular_functionsulfite oxidase activity
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18635.1.S1_at--1018--7691Chr08:26288711..26288735 (25 bp)
GGGTCGAGGCTCATAGATATCAGAA
LOC_Os08g41830
Os.18635.1.S1_at--159--2731Chr08:26288736..26288760 (25 bp)
AAGCAACGTGCCATACATATCTGAT
LOC_Os08g41830
Os.18635.1.S1_at--1026--7571Chr08:26288780..26288804 (25 bp)
GGGCATGGGTTCTATTCGAGGCTAC
LOC_Os08g41830
Os.18635.1.S1_at--857--6191Chr08:26288797..26288821 (25 bp)
GAGGCTACATTAGACGTTCCAGCAA
LOC_Os08g41830
Os.18635.1.S1_at--53--10011Chr08:26288834..26288959 (25 bp)
TAGCTAAGGCGGTGGACTCAGCAGC
LOC_Os08g41830
Os.18635.1.S1_at--329--8131Chr08:26288948..26288972 (25 bp)
GGACTCAGCAGCAAATGTTCAACCT
LOC_Os08g41830
Os.18635.1.S1_at--764--331Chr08:26289036..26289060 (25 bp)
ATACAGAATTCTTCGTGCGTGGGAA
LOC_Os08g41830
Os.18635.1.S1_at--172--71Chr08:26289134..26289158 (25 bp)
ATTGCAGCATTCGATGATTCTCGCA
LOC_Os08g41830
Os.18635.1.S1_at--579--6291Chr08:26289146..26289170 (25 bp)
GATGATTCTCGCAGACTGTGCTCCT
LOC_Os08g41830
Os.18635.1.S1_at--186--5731Chr08:26289159..26289183 (25 bp)
GACTGTGCTCCTGTACTATAGTACT
LOC_Os08g41830
Os.18635.1.S1_at--752--2251Chr08:26289298..26289322 (25 bp)
AAATTTGCAGTTCTTGTGCTCCATA
LOC_Os08g41830
Target Sequence 
GGGTCGAGGCTCATAGATATCAGAAAAGCAACGTGCCATACATATCTGATGGACCTCGGAGTGATAAGTGGGCATGGGTT
CTATTCGAGGCTACATTAGACGTTCCAGCAAACGCTGAGATAGTAGCTAAGGCGGTGGACTCAGCAGCAAATGTTCAACC
TGAAAAGGTGGAAGACGTATGGAACCTGAGAGGAATCCTCAACACATCTTGGCATCGGATCAAAATACAGAATTCTTCGT
GCGTGGGAAGATCCAAAATGTGAAATAAGTAAACTGCTTGGAATCAGAAGTCAAGAGTTTATAGTGCCCGGAATAATAAG
TTATTGCAGCATTCGATGATTCTCGCAGACTGTGCTCCTGTACTATAGTACTATGTTGGAATCGTGTTGCTGGCCTGGGC
TTATATGAGACGAAACACAATTTTTGGGAGTGATGTTAAGAAGATGATTAATACGTACTCCAGTATTTATGTTGTCTTCT
AATGGAAAATTTGCAGTTCTTGTGCTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis