Browse Element(s) Details


Os.10305.1.S1_at

Description gb:AK072408.1
DB_XREF= gi:32982431
TID=Os.10305.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083H19, full insert sequence.
FL= gb:AK061879.1 gb:AK072408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4188011/11Metallophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed
LOC_Os08g41890Os.6279.1.A1_at11/118+26315575..26320118microtubule associated protein family protein, putative, expressed
LOC_Os08g41900Os.46763.1.S1_at11/118+26319288..26329702expressed protein
LOC_Os08g41900OsAffx.2904.1.S1_at1/118+26319288..26329702expressed protein
LOC_Os08g41910Os.53175.1.S1_at11/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41910Os.22451.1.A1_at7/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10305.1.S1_at--441--4611Chr08:26312106..26312130 (25 bp)
GCGATCCCCAAGTGGAGCGTTTTCA
LOC_Os08g41880
Os.10305.1.S1_at--440--7631Chr08:26312137..26312161 (25 bp)
GGGACTTCGGGTTCGTCAAGCTCAC
LOC_Os08g41880
Os.10305.1.S1_at--553--6891Chr08:26312219..26312243 (25 bp)
GTATGACTCCTTCACCGTGGAGAGG
LOC_Os08g41880
Os.10305.1.S1_at--1086--1051Chr08:26312241..26312265 (25 bp)
AGGGATTACCGCGACGTGCTCAGCT
LOC_Os08g41880
Os.10305.1.S1_at--1042--1831Chr08:26312292..26312316 (25 bp)
ACGCTCGCCTCCTGATGAATGAAAC
LOC_Os08g41880
Os.10305.1.S1_at--953--8851Chr08:26312349..26312373 (25 bp)
TGATGCCTCATCGTCAAAATGCTGG
LOC_Os08g41880
Os.10305.1.S1_at--140--10571Chr08:26312430..26312454 (25 bp)
TTCTTCAACCATTTCGATCAGGTGT
LOC_Os08g41880
Os.10305.1.S1_at--215--10591Chr08:26312486..26312510 (25 bp)
TTCTCTTCCTCATGGATGGTGATGT
LOC_Os08g41880
Os.10305.1.S1_at--803--2451Chr08:26312519..26312543 (25 bp)
AAAATTGCTTAGCTGCTCGGGCACA
LOC_Os08g41880
Os.10305.1.S1_at--708--4771Chr08:26312530..26312554 (25 bp)
GCTGCTCGGGCACAAATGTCTAATA
LOC_Os08g41880
Os.10305.1.S1_at--144--5231Chr08:26312568..26312592 (25 bp)
GAATTTCTGAGTCCACACAATGCCC
LOC_Os08g41880
Target Sequence 
GCGATCCCCAAGTGGAGCGTTTTCAGGGACCGGGACTTCGGGTTCGTCAAGCTCACCGCGTTCAACCACTCGTCGCTGCT
GTTCGAGTACAAGAAGAGCAGCGATGGGAAGGTGTATGACTCCTTCACCGTGGAGAGGGATTACCGCGACGTGCTCAGCT
GCGTGCACGACAGCTGCCTCCCCACCACGCTCGCCTCCTGATGAATGAAACAAGGGAAAGGATCATTATTAGGATGCATG
AGTTGATGCCTCATCGTCAAAATGCTGGCAGCTGAGAAAGAGTGATCGGTCGGTCGATCGAGTTGGGTTTTATTTTTTTT
CTTCTTCTTCAACCATTTCGATCAGGTGTGGTAGTGGTCGATCGCTTGGCTCGATCGTGTTTCTCTTCCTCATGGATGGT
GATGTTGTGCAATAAAATTGCTTAGCTGCTCGGGCACAAATGTCTAATAAGATTGGCAATCTGAATTTCTGAGTCCACAC
AATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis