Browse Element(s) Details


Os.53175.1.S1_at

Description gb:AK071204.1
DB_XREF= gi:32981227
TID=Os.53175.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086N12, full insert sequence.
FL= gb:AK071204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4191011/11Sua5/YciO/YrdC/YwlC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed
LOC_Os08g41890Os.6279.1.A1_at11/118+26315575..26320118microtubule associated protein family protein, putative, expressed
LOC_Os08g41900Os.46763.1.S1_at11/118+26319288..26329702expressed protein
LOC_Os08g41900OsAffx.2904.1.S1_at1/118+26319288..26329702expressed protein
LOC_Os08g41910Os.53175.1.S1_at11/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41910Os.22451.1.A1_at7/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41920Os.40855.2.S1_x_at8/118+26351194..26352800hypothetical protein
LOC_Os08g41920Os.40855.4.S1_x_at2/118+26351194..26352800hypothetical protein
LOC_Os08g41930Os.40855.5.S1_x_at1/118+26354418..26355038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53175.1.S1_at--301--5711Chr08:26334414..26334438 (25 bp)
GACTAAAGTTATCCTACCATATGAC
LOC_Os08g41910
Os.53175.1.S1_at--176--951Chr08:26334455..26334479 (25 bp)
AGGAAATTTCTCATTCTATCCCCTG
LOC_Os08g41910
Os.53175.1.S1_at--1117--91Chr08:26334467..26334491 (25 bp)
ATTCTATCCCCTGACATTTGGCAAA
LOC_Os08g41910
Os.53175.1.S1_at--647--751Chr08:26334496..26334520 (25 bp)
ATGTACTGCATTTAAACACACCGTT
LOC_Os08g41910
Os.53175.1.S1_at--436--2191Chr08:26334511..26334535 (25 bp)
ACACACCGTTATGTATTATCTCGTA
LOC_Os08g41910
Os.53175.1.S1_at--209--10151Chr08:26334527..26334551 (25 bp)
TATCTCGTAATGCTTATCTATTTCA
LOC_Os08g41910
Os.53175.1.S1_at--395--3571Chr08:26334550..26334574 (25 bp)
CATATTTGTGACCTATTTCGTTGAC
LOC_Os08g41910
Os.53175.1.S1_at--890--191Chr08:26334564..26334588 (25 bp)
ATTTCGTTGACTTATGATTGGCATA
LOC_Os08g41910
Os.53175.1.S1_at--1043--10791Chr08:26334629..26334653 (25 bp)
TTGTATAAATGCACAGAGGCCCTTA
LOC_Os08g41910
Os.53175.1.S1_at--1023--2112Chr08:26334641..26334665 (25 bp)
ACAGAGGCCCTTATGTCTTCCTTTT
LOC_Os08g41910
Os.53175.1.S1_at--756--10291Chr08:26334663..26334687 (25 bp)
TTTCCTGCTTTAGGGCCCTAAGCTA
LOC_Os08g41910
Target Sequence 
GACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAATTTCTCATTCTATCCCCTGACATTTGGCAAATG
ATATGTACTGCATTTAAACACACCGTTATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGA
CTTATGATTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGCACAGAGGCCCTTA
TGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis