Browse Element(s) Details


Os.6279.1.A1_at

Description gb:AK067790.1
DB_XREF= gi:32977808
TID=Os.6279.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119G06, full insert sequence.
FL= gb:AK067790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4189011/11microtubule associated protein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed
LOC_Os08g41890Os.6279.1.A1_at11/118+26315575..26320118microtubule associated protein family protein, putative, expressed
LOC_Os08g41900Os.46763.1.S1_at11/118+26319288..26329702expressed protein
LOC_Os08g41900OsAffx.2904.1.S1_at1/118+26319288..26329702expressed protein
LOC_Os08g41910Os.53175.1.S1_at11/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41910Os.22451.1.A1_at7/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009536cellular_componentplastid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6279.1.A1_at--819--131Chr08:26319559..26319583 (25 bp)
ATTAAGACCCAACACAAGCTGCAGT
LOC_Os08g41890
Os.6279.1.A1_at--187--1331Chr08:26319596..26319620 (25 bp)
AGAGGCTTCAATACCAGCCCTGGCT
LOC_Os08g41890
Os.6279.1.A1_at--571--5931Chr08:26319634..26319658 (25 bp)
GAGCAGCAGACTTCCTACTATGGTT
LOC_Os08g41890
Os.6279.1.A1_at--1107--10091Chr08:26319652..26319676 (25 bp)
TATGGTTCAACAACCTAGTGCAGAT
LOC_Os08g41890
Os.6279.1.A1_at--705--5071Chr08:26319730..26319754 (25 bp)
GCAGCGCGCGCTAGGAAATAACAGA
LOC_Os08g41890
Os.6279.1.A1_at--572--6491Chr08:26319891..26319915 (25 bp)
GATAGCACCATTGTTCGAAGCTTAA
LOC_Os08g41890
Os.6279.1.A1_at--518--7471Chr08:26319944..26319968 (25 bp)
GTGTGCATTGATACCATAACCATGT
LOC_Os08g41890
Os.6279.1.A1_at--610--9191Chr08:26319975..26319999 (25 bp)
TGCCTTAATGCCTTGTCATACAGTA
LOC_Os08g41890
Os.6279.1.A1_at--1153--7111Chr08:26319989..26320013 (25 bp)
GTCATACAGTAATCCTTTTATCCTT
LOC_Os08g41890
Os.6279.1.A1_at--757--9771Chr08:26320032..26320056 (25 bp)
TAATGGTTCCCTTATCTGTTTTTGT
LOC_Os08g41890
Os.6279.1.A1_at--1041--6811Chr08:26320049..26320073 (25 bp)
GTTTTTGTACCAGCTAATTGCAAGT
LOC_Os08g41890
Target Sequence 
ATTAAGACCCAACACAAGCTGCAGTNGTCCATCAAGCAGAGGCTTCAATACCAGCCCTGGCTCAAGTACTATTTGGAGCA
GCAGACTTCCTACTATGGTTCAACAACCTAGTGCAGATAATTCCTCAGCTGAAAAAGATGTGCATATAAGAAAAGTTAGG
AACAGAAGTATGCAGCGCGCGCTAGGAAATAACAGAAGCATCTCAATNTNTTATGAAGATAAAACACCAAGTCTNTCCGC
AATAAAACAAGGCGTTTCACCAATTTGANTTTTTTTCCAAGTTNTTATTTGGTCCATTAGATGTNTACGGTAAGTTATGT
NTGGTGTGTGAAGATAGCACCATTGTTCGAAGCTTAAAAATGAATNGCAGTAGACACTAGACAATGTGTGCATTGATACC
ATAACCATGTAATTANTGCCTTAATGCCTTGTCATACAGTAATCCTTTTATCCTTACACTTTTAGCTATTTTTTAATGGT
TCCCTTATCTGTTTTTGTACCAGCTAATTGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6279.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis