Browse Element(s) Details


Os.46763.1.S1_at

Description gb:AK120362.1
DB_XREF= gi:37989985
TID=Os.46763.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067O11, full insert sequence.
FL= gb:AK120362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed
LOC_Os08g41890Os.6279.1.A1_at11/118+26315575..26320118microtubule associated protein family protein, putative, expressed
LOC_Os08g41900Os.46763.1.S1_at11/118+26319288..26329702expressed protein
LOC_Os08g41900OsAffx.2904.1.S1_at1/118+26319288..26329702expressed protein
LOC_Os08g41910Os.53175.1.S1_at11/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41910Os.22451.1.A1_at7/118+26331663..26334959Sua5/YciO/YrdC/YwlC family protein, expressed
LOC_Os08g41920Os.40855.2.S1_x_at8/118+26351194..26352800hypothetical protein
LOC_Os08g41920Os.40855.4.S1_x_at2/118+26351194..26352800hypothetical protein
LOC_Os08g41930Os.40855.5.S1_x_at1/118+26354418..26355038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46763.1.S1_at--779--511Chr08:26320584..26320689 (25 bp)
ATCGATGTGCTAATGCGGTTGCTGT
LOC_Os08g41900
Os.46763.1.S1_at--391--6671Chr08:26320567..26320591 (25 bp)
GTTGCTGTTGCTCCTAATGACGAAT
LOC_Os08g41900
Os.46763.1.S1_at--456--10511Chr08:26320153..26320177 (25 bp)
TTAATTGGCGTCTCACATATCCTCT
LOC_Os08g41900
Os.46763.1.S1_at--135--10051Chr08:26319629..26319653 (25 bp)
TAGTAGGAAGTCTGCTGCTCCAAAT
LOC_Os08g41900
Os.46763.1.S1_at--114--4731Chr08:26319589..26319613 (25 bp)
GCTGGTATTGAAGCCTCTGCTTGAT
LOC_Os08g41900
Os.46763.1.S1_at--134--3851Chr08:26319558..26319582 (25 bp)
CTGCAGCTTGTGTTGGGTCTTAATA
LOC_Os08g41900
Os.46763.1.S1_at--59--9851Chr08:26319533..26319557 (25 bp)
TAAATGAATTCTCATGCCTCCTTGC
LOC_Os08g41900
Os.46763.1.S1_at--931--591Chr08:26319520..26319544 (25 bp)
ATGCCTCCTTGCAAGTTGAGTCTGT
LOC_Os08g41900
Os.46763.1.S1_at--1050--6091Chr08:26319503..26319527 (25 bp)
GAGTCTGTACCTTTTTATTCTCCTG
LOC_Os08g41900
Os.46763.1.S1_at--677--9751Chr08:26319415..26319439 (25 bp)
TAATAACTACTTACCCATTGCCTGT
LOC_Os08g41900
Os.46763.1.S1_at--527--10671Chr08:26319380..26319404 (25 bp)
TTCCTTTTCCTTCAGTGTTAGCATG
LOC_Os08g41900
Target Sequence 
ATCGATGTGCTAATGCGGTTGCTGTTGCTCCTAATGACGAATACATTTCCACAGGGGGAAGTGACCAAAAAGTTGTTTTA
TATCATAGTAAAAGTGGGTGTGCCCACCTTAATTGGCGTCTCACATATCCTCTCCCAGGAAATGATTAATGTACTGCCAT
AATTTGTAGAATGAAATCTGAGGAATTATCTGCACTAGGTTGTTGAACCATAGTAGGAAGTCTGCTGCTCCAAATAGTAC
TTGAGCCAGGGCTGGTATTGAAGCCTCTGCTTGATGGACGACTGCAGCTTGTGTTGGGTCTTAATATAAATGAATTCTCA
TGCCTCCTTGCAAGTTGAGTCTGTACCTTTTTATTCTCCTGTAAAGAGAATCTTGATGAATTAAACAACAATTTGACTGA
TAATTTTCTGTATCACCAATCGATTAATAACTACTTACCCATTGCCTGTATTTTTCCTCTTCCTTTTCCTTCAGTGTTAG
CATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis