Browse Element(s) Details


Os.9281.1.S1_at

Description gb:AK065712.1
DB_XREF= gi:32975730
TID=Os.9281.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043M04, full insert sequence.
FL= gb:AK065712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4179011/11uridine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41770OsAffx.17464.1.S1_at11/118+26234100..26235778hypothetical protein
LOC_Os08g41780Os.54937.1.S1_at11/118+26246575..26251798ab-hydrolase associated lipase region family protein, expressed
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9281.1.S1_at--935--731Chr08:26261524..26261548 (25 bp)
ATGTTCTACTCATGGATCCTGTGCT
LOC_Os08g41790
Os.9281.1.S1_at--490--5891Chr08:26261723..26261747 (25 bp)
GAGCGGATCATGTTTCTCAATCTCA
LOC_Os08g41790
Os.9281.1.S1_at--1025--7691Chr08:26261853..26261877 (25 bp)
GGGTCCATTGTGTCTGCAAGCGATT
LOC_Os08g41790
Os.9281.1.S1_at--1026--2671Chr08:26261870..26261894 (25 bp)
AAGCGATTCCCTCGTCTGAAGATTG
LOC_Os08g41790
Os.9281.1.S1_at--1099--7371Chr08:26261961..26261985 (25 bp)
GTGATCGCTACTTCGGTACAGACTA
LOC_Os08g41790
Os.9281.1.S1_at--682--6591Chr08:26261992..26262016 (25 bp)
GATTGATACTGGCTTCTTTGGCGAT
LOC_Os08g41790
Os.9281.1.S1_at--1061--1711Chr08:26262088..26262112 (25 bp)
ACCATTGGAGGTACCGAAATCGTGC
LOC_Os08g41790
Os.9281.1.S1_at--755--2271Chr08:26262104..26262128 (25 bp)
AAATCGTGCGATTTCGTGTGTTAGT
LOC_Os08g41790
Os.9281.1.S1_at--903--3991Chr08:26262118..26262142 (25 bp)
CGTGTGTTAGTGTTTGCTGCTGTGA
LOC_Os08g41790
Os.9281.1.S1_at--165--10751Chr08:26262158..26262182 (25 bp)
TTGAATTTTGAAGGCCCCTGTCGCT
LOC_Os08g41790
Os.9281.1.S1_at--719--10811Chr08:26262215..26262239 (25 bp)
TTGTGACATGTAGAGCCCACTTCTC
LOC_Os08g41790
Target Sequence 
ATGTTCTACTCATGGATCCTGTGCTTGGTACAGGTAACTCGGCAAATCAAGCTATAGAACTTCTTATAAGTAGTGGAGTT
CCTGAGGAGCGGATCATGTTTCTCAATCTCATCTCGGCTCCTGAAGGGGTCCATTGTGTCTGCAAGCGATTCCCTCGTCT
GAAGATTGTAACCTCAGAGATCGAAACTGGGTTGAACGAGGAGTACCGGGTGATCCCAGGGTTAGGAGAGTATGGTGATC
GCTACTTCGGTACAGACTAATCAGGGATTGATACTGGCTTCTTTGGCGATGTGAAAAGATCACATTAGAGCTAACATTAC
CGTGAGAGAGATATATACTGGTGTTTGGTTGTTTGTGGTATACCATTGGAGGTACCGAAATCGTGCGATTTCGTGTGTTA
GTGTTTGCTGCTGTGATAAAAACTTCGGGTGTTGAATTTTGAAGGCCCCTGTCGCTAGTTACAGCGGCGTGTGAAAAAAG
GGAAAAATTTGTGACATGTAGAGCCCACTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis