Browse Element(s) Details


Os.54998.1.S1_at

Description gb:AK107277.1
DB_XREF= gi:32992486
TID=Os.54998.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A07, full insert sequence.
FL= gb:AK107277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g394101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein
LOC_Os11g39410OsAffx.31385.1.S1_at11/1111+22954846..22957148hypothetical protein
LOC_Os11g39410Os.54998.1.S1_at1/1111+22954846..22957148hypothetical protein
LOC_Os11g39420OsAffx.19252.1.S1_at11/1111+22958615..22964763Jacalin-like lectin domain containing protein
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54998.1.S1_at--808--8591Chr06:2184427..2184451 (25 bp)
TGGTCGTCGTGGTGCCGTACAACAT
NONE
Os.54998.1.S1_at--820--3431Chr06:2184462..2184486 (25 bp)
CAGATCAGCAACTTTGTCGTGCCAT
NONE
Os.54998.1.S1_at--975--491Chr06:2184485..2184509 (25 bp)
ATCGGGCGTCCTTACGAGGCCACAA
NONE
Os.54998.1.S1_at--1105--1792Chr06:2184590..2184614 (25 bp)
ACCGCCACCGTTCCTGAGAGAGAGA
NONE
Os.54998.1.S1_at--950--8771Chr06:2184721..2184745 (25 bp)
TGTTTTTATCCTAATGCCATGTATC
NONE
Os.54998.1.S1_at--214--6917Chr12:16735060..16735177 (25 bp)
GTATCTACATCAGAGATTAGCCTAG
NONE
Os.54998.1.S1_at--151--3971NONE
CGGAGGCCGGCAAGAGAGATCTAAT
NONE
Os.54998.1.S1_at--137--8853Chr09:16929322..16929344 (23 bp)
TGATCTCATCGAGTTCATATTCGAG
NONE
Os.54998.1.S1_at--1103--9932Chr06:2184869..2184893 (25 bp)
TACGAGTTAGTGTTCATGCCGCCAA
NONE
Os.54998.1.S1_at--581--271Chr06:2184909..2184933 (25 bp)
ATAGGTTATCCCAATCGTCTCAATT
NONE
Os.54998.1.S1_at--15--7171Chr06:2184925..2184949 (25 bp)
GTCTCAATTGTTGTATTCTGTGATT
NONE
Target Sequence 
TGGTCGTCGTGGTGCCGTACAACATCTCTGTGCTCCAGATCAGCAACTTTGTCGTGCCATCGGGCGTCCTTACGAGGCCA
CAACCGCTGCTCCCGACCGCCGTCGCTGCCGCTCCCCAACCGCCACCGCCGCCACCGTTCCCCTCCGCCTCGTCCCCACC
GCCACCGCCACCGTTCCTGAGAGAGAGAGATAAGGGAGAGAGGGGGAGGAAGAAGGGAGAGGGAGGATGACATGTGGGTC
CCACAATACTTTTTTTATGAATGACATATGGGTCCCACATATTTGTTTTATTTTTGTTTTTATCCTAATGCCATGTATCT
ACATCAGAGATTAGCCTAGACAAACCCAATCCGGTACCTACGGAGGCCGGCAAGAGAGATCTAATGCTATCTCTGATCTC
ATCGAGTTCATATTCGAGGAGAAAGGCTACCTCGTCGTCGAGTACGAGTTAGTGTTCATGCCGCCAAGTCGACGATGGCT
AGATAGGTTATCCCAATCGTCTCAATTGTTGTATTCTGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis