Browse Element(s) Details


Os.52669.1.S1_at

Description gb:AK068694.1
DB_XREF= gi:32978711
TID=Os.52669.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162M01, full insert sequence.
FL= gb:AK068694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g394309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein
LOC_Os11g39410OsAffx.31385.1.S1_at11/1111+22954846..22957148hypothetical protein
LOC_Os11g39410Os.54998.1.S1_at1/1111+22954846..22957148hypothetical protein
LOC_Os11g39420OsAffx.19252.1.S1_at11/1111+22958615..22964763Jacalin-like lectin domain containing protein
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein
LOC_Os11g39440NANA11+22985297..22986700retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39450OsAffx.19253.1.S1_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39450Os.9426.1.S1_s_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52669.1.S1_at--171--10391NONE
TTTTCTTATGCTTTCCCTGTACAGA
NONE
Os.52669.1.S1_at--476--4871NONE
GCTTTCCCTGTACAGATTCGAATGT
NONE
Os.52669.1.S1_at--397--191Chr11:22970106..22970130 (25 bp)
ATTTCATTGTATCTCAGGGACCTTC
LOC_Os11g39430
Os.52669.1.S1_at--808--10151Chr11:22970115..22970139 (25 bp)
TATCTCAGGGACCTTCTTGACTTGT
LOC_Os11g39430
Os.52669.1.S1_at--143--2871Chr11:22970214..22970238 (25 bp)
AAGTGCTTAAGATATGTCCTTGTGT
LOC_Os11g39430
Os.52669.1.S1_at--237--7271Chr11:22970229..22970253 (25 bp)
GTCCTTGTGTTTTCAATTTGACATA
LOC_Os11g39430
Os.52669.1.S1_at--826--191Chr11:22970258..22970282 (25 bp)
ATTTGCACCTAGGAATTTAGACTTA
LOC_Os11g39430
Os.52669.1.S1_at--317--3651Chr11:22970330..22970354 (25 bp)
CTTAGGAATTTCTGTCTTAGGATAT
LOC_Os11g39430
Os.52669.1.S1_at--737--791Chr11:22970491..22970515 (25 bp)
ATGTGGCTCTTTGTTGGTGAATGCA
LOC_Os11g39430
Os.52669.1.S1_at--1047--211Chr11:22970559..22970583 (25 bp)
ATATTGGAATTGTCAGGTGCTGCTA
LOC_Os11g39430
Os.52669.1.S1_at--782--3471Chr11:22970572..22970596 (25 bp)
CAGGTGCTGCTATTTGTATGTGAAA
LOC_Os11g39430
Target Sequence 
TTTTCTTATGCTTTCCCTGTACAGATTCGAATGTTAGAGAGTATCAAACTTTATTTCATTGTATCTCAGGGACCTTCTTG
ACTTGTCCAAAGACAACCTATAGATCAAGGAGAGTAAAACTCAAGGGATCTACATTTCTAGAGCAACAGAAGTAAGAAAA
AAGTGCTTAAGATATGTCCTTGTGTTTTCAATTTGACATAGGAAATTTGCACCTAGGAATTTAGACTTAGGACATATATA
TGCAAATGTTTTCAATTTAGACTTGGGAAATTTAGACTTAGGAATTTCTGTCTTAGGATATATTTGCAAATGTTTAGGAT
TTAGACTTAGAAGGTTTTGAACTTAGGATTTTTAGACTTAGGTATATATATTTGTAAATGTGAATGATTTGGCTATGAAT
ATGAATGTGCCTATATGCAAATGTGATGTGAATGTGAATGTGGCTCTTTGTTGGTGAATGCATGTGAATTGTGTGATTTG
GATTATGTGGTTGTGAATATAAAGCATATTGGAATTGTCAGGTGCTGCTATTTGTATGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis