Browse Element(s) Details


OsAffx.19253.1.S1_at

Description tigr:9639.m03600
TID=OsAffx.19253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3945011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein
LOC_Os11g39440NANA11+22985297..22986700retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39450OsAffx.19253.1.S1_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39450Os.9426.1.S1_s_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39460NANA11+22998545..23000528hypothetical protein
LOC_Os11g39470OsAffx.31386.1.S1_at9/1111+23001053..23003591hypothetical protein
LOC_Os11g39470Os.54691.1.S1_x_at1/1111+23001053..23003591hypothetical protein
LOC_Os11g39480OsAffx.31387.1.S1_at11/1111+23005292..23005957Jacalin-like lectin domain containing protein
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19253.1.S1_at--323--5711Chr11:22994093..22994117 (25 bp)
GACTAACAAGGCGATATCCTGCGTA
LOC_Os11g39450
OsAffx.19253.1.S1_at--810--2451Chr11:22994097..22994121 (25 bp)
AACAAGGCGATATCCTGCGTACTGC
LOC_Os11g39450
OsAffx.19253.1.S1_at--212--3211Chr11:22994099..22994123 (25 bp)
CAAGGCGATATCCTGCGTACTGCAG
LOC_Os11g39450
OsAffx.19253.1.S1_at--426--4631Chr11:22994103..22994127 (25 bp)
GCGATATCCTGCGTACTGCAGCTAA
LOC_Os11g39450
OsAffx.19253.1.S1_at--468--6511Chr11:22994105..22994129 (25 bp)
GATATCCTGCGTACTGCAGCTAACA
LOC_Os11g39450
OsAffx.19253.1.S1_at--1004--10131Chr11:22994107..22994131 (25 bp)
TATCCTGCGTACTGCAGCTAACAAA
LOC_Os11g39450
OsAffx.19253.1.S1_at--1038--9111Chr11:22994112..22994136 (25 bp)
TGCGTACTGCAGCTAACAAACAAGT
LOC_Os11g39450
OsAffx.19253.1.S1_at--581--1971Chr11:22994117..22994141 (25 bp)
ACTGCAGCTAACAAACAAGTCAGAT
LOC_Os11g39450
OsAffx.19253.1.S1_at--319--9251Chr11:22994417..22994441 (25 bp)
TCCTCAGCCTCCAACAAGTATTGCG
LOC_Os11g39450
OsAffx.19253.1.S1_at--115--9671Chr11:22994420..22994444 (25 bp)
TCAGCCTCCAACAAGTATTGCGGAT
LOC_Os11g39450
OsAffx.19253.1.S1_at--851--4451Chr11:22994423..22994447 (25 bp)
GCCTCCAACAAGTATTGCGGATTAA
LOC_Os11g39450
Target Sequence 
GACTAACAAGGCGATATCCTGCGTACTGCAGCTAACAAACAAGTCAGATGACATCGTCGAGTTCTATGCAAACACAAACA
AGAAGAAGTACCAAATACACAGGGACCAAGGAGTTATGGCACCATGGTCTAGGTGCTATGTCATCGTAACGCTGCAACCA
CAGGGGAGCGCACCACCGAACATGCAGTGCGACGATATGTTCTTTGTACGGAGCACTAGGGTGAGGGAGACAGACATCGG
CTCACTTGACATTAATGTCACTGAGCAGCACTTGGAAAAACAGATGGGTGAGGTTAAGTCATTGCCGATTGTCTTTGTTC
CAATTCCTCAGCCTCCAACAAGTATTGCGGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis