Browse Element(s) Details


Os.9426.1.S1_s_at

Description gb:AU090602
DB_XREF= gi:7662708
DB_XREF=AU090602
CLONE=R2664
TID=Os.9426.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9426 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567101.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3945011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein
LOC_Os11g39440NANA11+22985297..22986700retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39450OsAffx.19253.1.S1_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39450Os.9426.1.S1_s_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39460NANA11+22998545..23000528hypothetical protein
LOC_Os11g39470OsAffx.31386.1.S1_at9/1111+23001053..23003591hypothetical protein
LOC_Os11g39470Os.54691.1.S1_x_at1/1111+23001053..23003591hypothetical protein
LOC_Os11g39480OsAffx.31387.1.S1_at11/1111+23005292..23005957Jacalin-like lectin domain containing protein
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9426.1.S1_s_at--633--1731Chr11:22994213..22994237 (25 bp)
ACCATGGTCTAGGTGCTATGTCATC
LOC_Os11g39450
Os.9426.1.S1_s_at--746--10111Chr11:22994229..22994253 (25 bp)
TATGTCATCGTAACGCTGCAACCAC
LOC_Os11g39450
Os.9426.1.S1_s_at--1097--7631Chr11:22994256..22994280 (25 bp)
GGGAGCGCACCACCGAACATGCAGT
LOC_Os11g39450
Os.9426.1.S1_s_at--4--5031Chr11:22994276..22994300 (25 bp)
GCAGTGCGACGATATGTTCTTTGTA
LOC_Os11g39450
Os.9426.1.S1_s_at--110--6731Chr11:22994291..22994315 (25 bp)
GTTCTTTGTACGGAGCACTAGGGTG
LOC_Os11g39450
Os.9426.1.S1_s_at--823--3411Chr11:22994323..22994347 (25 bp)
CAGACATCGGCTCACTTGACATTAA
LOC_Os11g39450
Os.9426.1.S1_s_at--435--2991Chr11:22994346..22994370 (25 bp)
AATGTCACTGAGCAGCACTTGGAAA
LOC_Os11g39450
Os.9426.1.S1_s_at--1030--3591Chr11:22994392..22994416 (25 bp)
CATTGCCGATTGTCTTTGTTCCAAT
LOC_Os11g39450
Os.9426.1.S1_s_at--634--9831Chr11:22994445..22994469 (25 bp)
TAAACGGCATGGTTTGAGGCATCAT
LOC_Os11g39450
Os.9426.1.S1_s_at--284--7051Chr11:22994473..22994497 (25 bp)
GTAACATCATCAATTTGTGTCGGCA
LOC_Os11g39450
Os.9426.1.S1_s_at--879--8191Chr11:22994545..22994569 (25 bp)
GGAATTTCAAATTCACTACTCGATG
LOC_Os11g39450
Target Sequence 
ACCATGGTCTAGGTGCTATGTCATCGTAACGCTGCAACCACAGGGGAGCGCACCACCGAACATGCAGTGCGACGATATGT
TCTTTGTACGGAGCACTAGGGTGAGGGAGACAGACATCGGCTCACTTGACATTAATGTCACTGAGCAGCACTTGGAAAAA
CAGATGGGTGANGGTTAAGTCATTGCCGATTGTCTTTGTTCCAATTCCNTCAGCCTCCANCAAGTATTNGCGGATTAAAC
GGCATGGTTTGAGGCATCATGGAGTAACATCATCAATTTGTGTCGGCATNTNTGATATGCTTACAAATATTTAAGTTGTT
CGATGAGTTACTTTTTTGGAATTTCAAATTCACTACTCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9426.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis