Browse Element(s) Details


OsAffx.31387.1.S1_at

Description tigr:9639.m03603
TID=OsAffx.31387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3948011/11Jacalin-like lectin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39440NANA11+22985297..22986700retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39450OsAffx.19253.1.S1_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39450Os.9426.1.S1_s_at11/1111+22990741..22994690Protein kinase domain containing protein, expressed
LOC_Os11g39460NANA11+22998545..23000528hypothetical protein
LOC_Os11g39470OsAffx.31386.1.S1_at9/1111+23001053..23003591hypothetical protein
LOC_Os11g39470Os.54691.1.S1_x_at1/1111+23001053..23003591hypothetical protein
LOC_Os11g39480OsAffx.31387.1.S1_at11/1111+23005292..23005957Jacalin-like lectin domain containing protein
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein
LOC_Os11g39510NANA11+23021147..23029240retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31387.1.S1_at--568--1411Chr11:23005763..23005787 (25 bp)
AGACAGTTCCTCACCGTCTAGAAAG
LOC_Os11g39480
OsAffx.31387.1.S1_at--501--6571Chr11:23005710..23005734 (25 bp)
GATTCCCTCGAATTTTCCTATAGTG
LOC_Os11g39480
OsAffx.31387.1.S1_at--683--5591Chr11:23005674..23005698 (25 bp)
GACAATCACACTTCAGGTCCTTGGG
LOC_Os11g39480
OsAffx.31387.1.S1_at--721--2291Chr11:23005518..23005538 (21 bp)
AAATGATTCGGCTTGGCTCTCACGA
LOC_Os11g39480
OsAffx.31387.1.S1_at--764--10851Chr11:23005506..23005530 (25 bp)
TTGGCTCTCACGACTTTCTAAGGGA
LOC_Os11g39480
OsAffx.31387.1.S1_at--350--10091Chr11:23005467..23005491 (25 bp)
TAGGTCCGTTTAATTCAATGCCGAA
LOC_Os11g39480
OsAffx.31387.1.S1_at--439--10211Chr11:23005439..23005463 (25 bp)
TATTACATCGCTTAAGTTCTTCACA
LOC_Os11g39480
OsAffx.31387.1.S1_at--1056--8611Chr11:23005412..23005436 (25 bp)
TGGTGGTACCTATGGACCTTTTGGA
LOC_Os11g39480
OsAffx.31387.1.S1_at--95--5711Chr11:23005376..23005400 (25 bp)
GACTCCGTTTAAAGTTGATCCGTTG
LOC_Os11g39480
OsAffx.31387.1.S1_at--79--5131Chr11:23005341..23005365 (25 bp)
GCAACATCGTTGGTTTCTTTGGCCG
LOC_Os11g39480
OsAffx.31387.1.S1_at--235--8471Chr11:23005322..23005346 (25 bp)
TGGCCGTGCAGAGCAGTGCCTCGAA
LOC_Os11g39480
Target Sequence 
AGACAGTTCCTCACCGTCTAGAAAGCATAACAATTTATAGTTCTGTTGTTGTTGATTCCCTCGAATTTTCCTATAGTGAA
GTTAATGGGGACAATCACACTTCAGGTCCTTGGGGAAGTGCTAGTAGTGAAAGTAGCCAAATGATTCGGCTTGGCTCTCA
CGACTTTCTAAGGGAAGTTTCTGGAACAGTAGGTCCGTTTAATTCAATGCCGAATGTTATTACATCGCTTAAGTTCTTCA
CAAATGGTGGTACCTATGGACCTTTTGGACAAGGAGGAGGGACTCCGTTTAAAGTTGATCCGTTGGAGTATAGTAGCAAC
ATCGTTGGTTTCTTTGGCCGTGCAGAGCAGTGCCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis