Browse Element(s) Details


OsAffx.31385.1.S1_at

Description tigr:9639.m03596
TID=OsAffx.31385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3941011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein
LOC_Os11g39410OsAffx.31385.1.S1_at11/1111+22954846..22957148hypothetical protein
LOC_Os11g39410Os.54998.1.S1_at1/1111+22954846..22957148hypothetical protein
LOC_Os11g39420OsAffx.19252.1.S1_at11/1111+22958615..22964763Jacalin-like lectin domain containing protein
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31385.1.S1_at--1139--1251Chr11:22955869..22955893 (25 bp)
AGATCTTACCCAGCCAATGTTTGCA
LOC_Os11g39410
OsAffx.31385.1.S1_at--72--8131Chr11:22955843..22955867 (25 bp)
GGACTCAAGTCGGATGCATCATTTT
LOC_Os11g39410
OsAffx.31385.1.S1_at--229--431Chr11:22955826..22955850 (25 bp)
ATCATTTTCCCTGTTTTCACTGCAA
LOC_Os11g39410
OsAffx.31385.1.S1_at--619--831Chr11:22955745..22955769 (25 bp)
ATGGAAGACAACCTAGCGCTGGCCG
LOC_Os11g39410
OsAffx.31385.1.S1_at--501--4791Chr11:22955721..22955745 (25 bp)
GCTCCTCACATCCAGTCAGAAAAGA
LOC_Os11g39410
OsAffx.31385.1.S1_at--708--4511Chr11:22955692..22955716 (25 bp)
GCCGACAACTTCAGCTCTACAGAAA
LOC_Os11g39410
OsAffx.31385.1.S1_at--159--8451Chr11:22955656..22955680 (25 bp)
GGCCAAGCCCATGACATCTGACAAT
LOC_Os11g39410
OsAffx.31385.1.S1_at--68--471Chr11:22955641..22955665 (25 bp)
ATCTGACAATGGTCCGGTGCCAATG
LOC_Os11g39410
OsAffx.31385.1.S1_at--117--1511Chr11:22955565..22955588 (24 bp)
AGCACCCTTTGATCGACTGCAAGGA
LOC_Os11g39410
OsAffx.31385.1.S1_at--950--2271Chr11:22955008..22955032 (25 bp)
AAATGCAGTACCTCAACTCGGCTTT
LOC_Os11g39410
OsAffx.31385.1.S1_at--437--8391Chr11:22954878..22954902 (25 bp)
GGCGCACAAACAGCTGACATCAATT
LOC_Os11g39410
Target Sequence 
AGATCTTACCCAGCCAATGTTTGCATGGACTCAAGTCGGATGCATCATTTTCCCTGTTTTCACTGCAACTCCAATCTCGC
CTTCCCCAAAGCCAGTTAGGATCGAGAACAACATTGCAAGGACAATGGAAGACAACCTAGCGCTGGCCGCTCCTCACATC
CAGTCAGAAAAGAGGGCGCCGACAACTTCAGCTCTACAGAAAATTCCAAAAGCGGCCAAGCCCATGACATCTGACAATGG
TCCGGTGCCAATGAGGAAATCTCCACCTAACGACAACACCTGGTGCTCGATCCACGAGACATCGCAGCACCCTTTGATCG
ACTGCAAGGAAGACTACTTTCAATCCATTAACCTTTCCGGAAGGAGATGCATGGGCGAGACAAATGCAGTACCTCAACTC
GGCTTTCCTGCCGCAGCCGGACAATCCTCACAGGGTCCATCCCGAGTTCAACAACCAGCCAACGACGCTCGGGCGGCCAA
GAACAACGACGCTTGGGTGGCCCAGAACAACGGCGCACAAACAGCTGACATCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis