Browse Element(s) Details


Os.5500.1.S1_s_at

Description gb:AK068096.1
DB_XREF= gi:32978114
TID=Os.5500.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134F13, full insert sequence.
FL= gb:AK068096.1 gb:AK104404.1 gb:AK119591.1 gb:AK119590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2318011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23160Os.33704.3.S1_x_at5/118+13834051..13839223hypothetical protein
LOC_Os08g23170Os.55292.1.S1_at11/118+13840300..13840954expressed protein
LOC_Os08g23180Os.5500.1.S1_s_at11/118+13852228..13855278Fasciclin domain containing protein, expressed
LOC_Os08g23189NANA8+13857060..13857278hypothetical protein
LOC_Os08g23200OsAffx.19258.2.S1_x_at10/118+13859291..13862866hAT family dimerisation domain containing protein
LOC_Os08g23200OsAffx.24518.2.S1_x_at2/118+13859291..13862866hAT family dimerisation domain containing protein
LOC_Os08g23200Os.57200.1.S1_x_at1/118+13859291..13862866hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5500.1.S1_s_at--581--7231Chr08:13852635..13852659 (25 bp)
GTCCGTGCTCGCCAGGTGGGTTACC
LOC_Os08g23180
Os.5500.1.S1_s_at--650--7491Chr08:13852567..13852591 (25 bp)
GTGGTGGTTTGAGCTTAGTGCATTT
LOC_Os08g23180
Os.5500.1.S1_s_at--517--7331Chr08:13852550..13852574 (25 bp)
GTGCATTTTGTGTTGAGTTCTTCAG
LOC_Os08g23180
Os.5500.1.S1_s_at--1031--10611Chr08:13852497..13852521 (25 bp)
TTCGTGTCCCTCGTTGGTGCAAAAA
LOC_Os08g23180
Os.5500.1.S1_s_at--813--3991Chr08:13852495..13852519 (25 bp)
CGTGTCCCTCGTTGGTGCAAAAAAT
LOC_Os08g23180
Os.5500.1.S1_s_at--692--10191Chr08:13852451..13852475 (25 bp)
TATATTTATCGCTGCAGTTCCCAGG
LOC_Os08g23180
Os.5500.1.S1_s_at--471--10431Chr08:13852446..13852470 (25 bp)
TTATCGCTGCAGTTCCCAGGGAAAA
LOC_Os08g23180
Os.5500.1.S1_s_at--479--1331Chr08:13852392..13852416 (25 bp)
AGAGGTGTGATTCTAGAGTTTTTCA
LOC_Os08g23180
Os.5500.1.S1_s_at--770--6571Chr08:13852384..13852408 (25 bp)
GATTCTAGAGTTTTTCATTTTCTTT
LOC_Os08g23180
Os.5500.1.S1_s_at--645--9551Chr08:13852364..13852388 (25 bp)
TCTTTTGTTTATTGGGTTTGTGGTG
LOC_Os08g23180
Os.5500.1.S1_s_at--358--7691Chr08:13852351..13852375 (25 bp)
GGGTTTGTGGTGATCATTTTGTAAT
LOC_Os08g23180
Target Sequence 
GTCCGTGCTCGCCAGGTGGGTTACCGCCGCCGCCACGGTCGCCGCGGCGTTGGCGTTGGCAGCTTGAGGTGGTGGTTTGA
GCTTAGTGCATTTTGTGTTGAGTTCTTCAGCTCCTCTCCCTCTTCTTCTTTTGTCCAATTCGTGTCCCTCGTTGGTGCAA
AAAATAAGAAGGGCTATTTATTTTTATATTTATCGCTGCAGTTCCCAGGGAAAAAATTGAAACAAAAAAGAAGAAACTTA
ATTAGAGGTGTGATTCTAGAGTTTTTCATTTTCTTTTGTTTATTGGGTTTGTGGTGATCATTTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5500.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis