Browse Element(s) Details


Os.55292.1.S1_at

Description gb:AK107815.1
DB_XREF= gi:32993024
TID=Os.55292.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F07, full insert sequence.
FL= gb:AK107815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2317011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein
LOC_Os08g23150Os.17629.1.A1_at11/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23150OsAffx.21707.1.S1_at1/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23160Os.33704.3.S1_x_at5/118+13834051..13839223hypothetical protein
LOC_Os08g23170Os.55292.1.S1_at11/118+13840300..13840954expressed protein
LOC_Os08g23180Os.5500.1.S1_s_at11/118+13852228..13855278Fasciclin domain containing protein, expressed
LOC_Os08g23189NANA8+13857060..13857278hypothetical protein
LOC_Os08g23200OsAffx.19258.2.S1_x_at10/118+13859291..13862866hAT family dimerisation domain containing protein
LOC_Os08g23200OsAffx.24518.2.S1_x_at2/118+13859291..13862866hAT family dimerisation domain containing protein
LOC_Os08g23200Os.57200.1.S1_x_at1/118+13859291..13862866hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55292.1.S1_at--505--4171Chr08:13840380..13840404 (25 bp)
CGCCTCTTGCTTTTGGCAGGTGCGG
LOC_Os08g23170
Os.55292.1.S1_at--369--9571Chr08:13840384..13840408 (25 bp)
TCTTGCTTTTGGCAGGTGCGGCCAC
LOC_Os08g23170
Os.55292.1.S1_at--674--6951Chr08:13840419..13840443 (25 bp)
GTAGCAGCGGACAACGCCACGGCCA
LOC_Os08g23170
Os.55292.1.S1_at--212--8411Chr08:13840461..13840485 (25 bp)
GGCGCCACCGGGAACAATAATAACA
LOC_Os08g23170
Os.55292.1.S1_at--310--4411Chr08:13840464..13840488 (25 bp)
GCCACCGGGAACAATAATAACAATA
LOC_Os08g23170
Os.55292.1.S1_at--148--3091Chr08:13840485..13840509 (25 bp)
AATAACAATCCGACCATATGCAGCG
LOC_Os08g23170
Os.55292.1.S1_at--926--2231Chr08:13840489..13840513 (25 bp)
ACAATCCGACCATATGCAGCGGCGA
LOC_Os08g23170
Os.55292.1.S1_at--538--551Chr08:13840492..13840516 (25 bp)
ATCCGACCATATGCAGCGGCGAAGG
LOC_Os08g23170
Os.55292.1.S1_at--879--8371Chr08:13840509..13840533 (25 bp)
GGCGAAGGTTGCCAGCCGCCGCCAG
LOC_Os08g23170
Os.55292.1.S1_at--294--3471Chr08:13840531..13840555 (25 bp)
CAGGGCAGCCGCTGCCGATCTACGG
LOC_Os08g23170
Os.55292.1.S1_at--349--3091Chr08:13840930..13840954 (25 bp)
AATAATACGGTCGTGTATCATGATC
LOC_Os08g23170
Target Sequence 
CGCCTCTTGCTTTTGGCAGGTGCGGCCACGGCGGCGGCGGTAGCAGCGGACAACGCCACGGCCACGGGCGGCAGCGGCGA
CGGCGCCACCGGGAACAATAATAACAATAACAATCCGACCATATGCAGCGGCGAAGGTTGCCAGCCGCCGCCAGGGCAGC
CGCTGCCGATCTACGGCTACCCTTCGCCTCCGCCGCCGTCTCAACCGGCCGGACCGTCGTCGCACACGCCACCGTGCCCG
CCGGCGGCGGTCGTCTGCTGCGGCGGCGGCGGCGGCGGCGGGCAGTACACGCCGCAGCAGCCGTACTACTACGCGCCCCC
TGCCGGCTACGTCCCGTACTACAACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCGGCCGTTGGTTATTATT
ATTACGTGATGGCTGCTTATCTCTTACTCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATTATAA
AGGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGTGTTTTGGAATTTGGAATAATACGG
TCGTGTATCATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis