Browse Element(s) Details


Os.17629.1.A1_at

Description gb:CR279397
DB_XREF= gi:44665963
DB_XREF=CR279397
CLONE=y747a07p3
TID=Os.17629.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17629 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_178521.1 (A.thaliana) putative indole-3-glycerol phosphate synthase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2315011/11Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23120Os.9869.1.S1_at11/118+13797608..13801838RNA recognition motif family protein, expressed
LOC_Os08g23130Os.50452.2.S1_x_at11/118+13804750..13809222Oligopeptide transporter 5, putative, expressed
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein
LOC_Os08g23150Os.17629.1.A1_at11/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23150OsAffx.21707.1.S1_at1/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23160Os.33704.3.S1_x_at5/118+13834051..13839223hypothetical protein
LOC_Os08g23170Os.55292.1.S1_at11/118+13840300..13840954expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004425molecular_functionindole-3-glycerol-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17629.1.A1_at--616--3151Chr08:13823321..13823345 (25 bp)
AATTCTGCTTATTGCCGCTGTGCTA
LOC_Os08g23150
Os.17629.1.A1_at--542--5671Chr08:13823355..13823379 (25 bp)
GACATAAAGTACTTCCTTCGCATAT
LOC_Os08g23150
Os.17629.1.A1_at--1100--7511Chr08:13823763..13823787 (25 bp)
GTGGAGTTCAGCTTATTGGCATCAA
LOC_Os08g23150
Os.17629.1.A1_at--174--4231Chr08:13823791..13823964 (25 bp)
CCGCAGCCTTGAAACATTTGTTGTC
LOC_Os08g23150
Os.17629.1.A1_at--701--211Chr08:13824946..13824965 (20 bp)
ATATTGGTTGTTGGCGAATCAGGGC
LOC_Os08g23150
Os.17629.1.A1_at--663--1811Chr08:13824972..13824996 (25 bp)
ACCCAGATGACGTTGCTTATGTGCA
LOC_Os08g23150
Os.17629.1.A1_at--115--2451Chr08:13824996..13825017 (22 bp)
AAAATGCTGGAGTTTCCGCTGTTTT
LOC_Os08g23150
Os.17629.1.A1_at--250--9731Chr08:13825369..13825393 (25 bp)
TCAAGCAAGACGACCCTGGACGAGC
LOC_Os08g23150
Os.17629.1.A1_at--96--4331Chr08:13825393..13825417 (25 bp)
CCATTGCTGGGCTCTTCGGGAAAGA
LOC_Os08g23150
Os.17629.1.A1_at--83--731Chr08:13825446..13825470 (25 bp)
ATGTTTTTGGTATAGCGTAGCAGCT
LOC_Os08g23150
Os.17629.1.A1_at--518--5071Chr08:13825465..13825489 (25 bp)
GCAGCTGTTTGTTGTTAGCCTGAAC
LOC_Os08g23150
Target Sequence 
AATTCTGCTTATTGCCGCTGTGCTACCTGATCTCGACATAAAGTACTTCCTTCGCATATGTNAAGGANTTGGGAATGNAC
NAGCTCTTATTNGAGGTTCATGATGAAAGGGAGATGGAGCGTGTGCTGAATATAAGTGGAGTTCAGCTTATTGGCATCAA
TANCCGCAGCCTTGAAACATTTGTTGTCGATACTTCAAACACAAAGATGTTGCTAGATATGCATGGTGATACCATCAGGG
AGAAGGGAATATTGGTTGTTGGCGAATCAGGGCTGTTCAACCCAGATGACGTTGCTTATGTGCAAAATGCTGGAGTTTCC
GCTGTTTTGGTGGGAGAATCCCTGGTCAAGCAAGACGACCCTGGACGAGCCATTGCTGGGCTCTTCGGGAAAGAACTTTT
GCATTGAGAAACAAATTCGTATATGTTTTTGGTATAGCGTAGCAGCTGTTTGTTGTTAGCCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17629.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis