Browse Element(s) Details


Os.55095.1.S1_at

Description gb:AK107482.1
DB_XREF= gi:32992691
TID=Os.55095.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C05, full insert sequence.
FL= gb:AK107482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4129011/11BTB/POZ domain containing protein, expressed
LOC_Os08g369941/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41240OsAffx.31423.1.S1_at11/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41240OsAffx.31423.2.S1_at4/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41250OsAffx.31423.2.S1_at11/1111+24228912..24229355expressed protein
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g41290Os.55095.1.S1_at11/1111+24249175..24250275BTB/POZ domain containing protein, expressed
LOC_Os11g41300OsAffx.7373.1.S1_x_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.7373.1.S1_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.31424.1.S1_x_at2/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.7374.1.S1_at11/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.31424.1.S1_x_at1/1111+24257358..24260546BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.55095.1.S1_at--790--9791Chr11:24250153..24250177 (25 bp)
TAAGCAGGCGTGTTGACGCAAGCGT
LOC_Os11g41290
Os.55095.1.S1_at--339--7411Chr11:24250162..24250186 (25 bp)
GTGTTGACGCAAGCGTGACGCCGAC
LOC_Os11g41290
Os.55095.1.S1_at--60--2691Chr11:24250172..24250196 (25 bp)
AAGCGTGACGCCGACTGATTCAGCA
LOC_Os11g41290
Os.55095.1.S1_at--779--7371Chr11:24250176..24250200 (25 bp)
GTGACGCCGACTGATTCAGCAGCTA
LOC_Os11g41290
Os.55095.1.S1_at--154--5732Chr11:24250184..24250208 (25 bp)
GACTGATTCAGCAGCTACATGTGAT
LOC_Os11g41290
Os.55095.1.S1_at--964--1511Chr11:24250193..24250217 (25 bp)
AGCAGCTACATGTGATATGCCACAG
LOC_Os11g41290
Os.55095.1.S1_at--450--7411Chr11:24250204..24250228 (25 bp)
GTGATATGCCACAGCGTTATCCGTG
LOC_Os11g41290
Os.55095.1.S1_at--828--10131Chr11:24250208..24250232 (25 bp)
TATGCCACAGCGTTATCCGTGGTTT
LOC_Os11g41290
Os.55095.1.S1_at--1131--4371Chr11:24250211..24250235 (25 bp)
GCCACAGCGTTATCCGTGGTTTAAG
LOC_Os11g41290
Os.55095.1.S1_at--1110--7651Chr11:24250236..24250260 (25 bp)
GGGATCTTTTTGAAGTTAGTAGCTG
LOC_Os11g41290
Os.55095.1.S1_at--423--6791Chr11:24250250..24250274 (25 bp)
GTTAGTAGCTGGTTGTTTGTTCTTT
LOC_Os11g41290
Target Sequence
TAAGCAGGCGTGTTGACGCAAGCGTGACGCCGACTGATTCAGCAGCTACATGTGATATGCCACAGCGTTATCCGTGGTTT
AAGGGGATCTTTTTGAAGTTAGTAGCTGGTTGTTTGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis