Browse Element(s) Details


OsAffx.29307.1.S1_at

Description tigr:9636.m02187
TID=OsAffx.29307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative mucin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g412701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41210Os.52367.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7371.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7039.1.S1_at1/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41230OsAffx.31423.1.S1_at11/1111+24223130..24223696MATH domain containing protein
LOC_Os11g41240OsAffx.31423.1.S1_at11/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41240OsAffx.31423.2.S1_at4/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41250OsAffx.31423.2.S1_at11/1111+24228912..24229355expressed protein
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g41290Os.55095.1.S1_at11/1111+24249175..24250275BTB/POZ domain containing protein, expressed
LOC_Os11g41300OsAffx.7373.1.S1_x_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.7373.1.S1_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.31424.1.S1_x_at2/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.7374.1.S1_at11/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.31424.1.S1_x_at1/1111+24257358..24260546BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29307.1.S1_at--671--951Chr08:13411152..13411176 (25 bp)
AGGACAATGAGAACCCCGGCCGCCG
NONE
OsAffx.29307.1.S1_at--742--1951Chr08:13411107..13411131 (25 bp)
ACTGGAATCTGTTTCCCCTCATGCA
NONE
OsAffx.29307.1.S1_at--1040--8271Chr08:13410707..13410731 (25 bp)
GGCTTGGCTGATCTAGGCTGTCCTT
NONE
OsAffx.29307.1.S1_at--790--8811Chr08:13410699..13410723 (25 bp)
TGATCTAGGCTGTCCTTCCCGTGGA
NONE
OsAffx.29307.1.S1_at--463--7512Chr08:13410679..13410703 (25 bp)
GTGGACCAGCGGTGGACCGCCCTTT
NONE
OsAffx.29307.1.S1_at--1070--10231Chr08:13410597..13410621 (25 bp)
TTTGGTGGACTTGGCCCACACCAGC
NONE
OsAffx.29307.1.S1_at--261--100712Chr11:10255569..10255593 (25 bp)
TAGTGGAACTCGACGATACCGACAA
NONE
OsAffx.29307.1.S1_at--311--8392Chr08:13410320..13410344 (25 bp)
GGCGACCTGGCTCCGATAAGCTCCG
NONE
OsAffx.29307.1.S1_at--696--35100Chr12:14764097..14764119 (23 bp)
ATAAGCTCCGACTTCGTAGGCTGTG
NONE
OsAffx.29307.1.S1_at--790--7735Chr05:10562012..10562159 (25 bp)
GGTGGATGTGTTGGCTCTAAGATTC
NONE
OsAffx.29307.1.S1_at--701--6617Chr12:10217184..10217208 (25 bp)
GTTGGCTCTAAGATTCGATGCCTTA
NONE
Target Sequence 
AGGACAATGAGAACCCCGGCCGCCGCTCGGTTCGCGTCCTCCACCACTGGAATCTGTTTCCCCTCATGCACCGCTCCCCG
CGCCGTCTGCAGGTGGCCGCGCGCCGCCACCGTGCCATGGCCGGCCGGGCCGGTCTCGGCCGCGCCCATGCCCCAGCGGC
TCGCCCTCTACCGCCCGATCGGCTTGGCTGATCTAGGCTGTCCTTCCCGTGGACCAGCGGTGGACCGCCCTTTGGTCCCG
GTCCACGGTGGACCGGTGGCTCCCTGTGCCGCTAACGCGTGGGGCCCACCTTTGGTGGACTTGGCCCACACCAGCCCCAC
TGTGTCGATCGGGGATACCCGTAGACCGGATATAGAGGGTATTAGGTTGATATGGGATTATATGATGGAAACCATAGATT
ACAAAGGGAATAGTGGAACTCGACGATACCGACAAGATCGTAGTCGAGTTGATCCGACTAGATCTCCCGGCGACCTGGCT
CCGATAAGCTCCGACTTCGTAGGCTGTGGTGGATGTGTTGGCTCTAAGATTCGATGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis