Browse Element(s) Details


OsAffx.7039.1.S1_at

Description tigr:9639.m00700
TID=OsAffx.7039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0762011/11hypothetical protein
LOC_Os11g412101/11disease resistance protein RPM1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07609NANA11+3863627..3863913NA
LOC_Os11g07620OsAffx.7039.1.S1_at11/1111+3882256..3883183hypothetical protein
LOC_Os11g07630OsAffx.18728.1.S1_at11/1111+3884997..3885398hypothetical protein
LOC_Os11g07640Os.29067.2.S1_at5/1111+3891550..3892088hypothetical protein
LOC_Os11g07650NANA11+3903497..3908404retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7039.1.S1_at--1046--6211Chr11:3882270..3882375 (25 bp)
GATGGCGACGACTAAAGTGCCTGCA
LOC_Os11g07620
OsAffx.7039.1.S1_at--84--4611Chr11:3882357..3882379 (23 bp)
GCGACGACTAAAGTGCCTGCACGTG
LOC_Os11g07620
OsAffx.7039.1.S1_at--134--9194Chr11:3882368..3882392 (25 bp)
TGCCTGCACGTGAAAATCGCGATTT
LOC_Os11g07620
OsAffx.7039.1.S1_at--904--5514Chr11:3882379..3882403 (25 bp)
GAAAATCGCGATTTTTGCGCGCGGG
LOC_Os11g07620
OsAffx.7039.1.S1_at--819--531Chr11:3882383..3882404 (22 bp)
ATCGCGATTTTTGCGCGCGGGTCCA
LOC_Os11g07620
OsAffx.7039.1.S1_at--945--5071Chr11:3882945..3882969 (25 bp)
GCAGCCATGACGAGGACCCTGACGA
LOC_Os11g07620
OsAffx.7039.1.S1_at--1135--8931Chr11:3882964..3882988 (25 bp)
TGACGACCGCGCTGGCCCGATCAAG
LOC_Os11g07620
OsAffx.7039.1.S1_at--770--4711Chr11:3882974..3882998 (25 bp)
GCTGGCCCGATCAAGGCCACTAGAT
LOC_Os11g07620
OsAffx.7039.1.S1_at--795--6451Chr11:3882982..3883006 (25 bp)
GATCAAGGCCACTAGATTCGGTGGA
LOC_Os11g07620
OsAffx.7039.1.S1_at--398--8051Chr11:3883004..3883028 (25 bp)
GGAGAGGGCTCAACAACTGCGGCGA
LOC_Os11g07620
OsAffx.7039.1.S1_at--316--4011Chr11:3883119..3883143 (25 bp)
CGTCTAAGAGGGTGGCGAGGGCTAT
LOC_Os11g07620
Target Sequence 
GATGGCGACGACTAAAGTGCCTGCACGTGAAAATCGCGATTTTTGCGCGCGGGTCCAAGGTGGCGGTGTTGGAAACTGGG
TAAGGGGAGAATGGGGCAGCCATGACGAGGACCCTGACGACCGCGCTGGCCCGATCAAGGCCACTAGATTCGGTGGAGAG
GGCTCAACAACTGCGGCGAGTGCAAAGGGGAGGAGCGGCGGTCGAGTCAAAGGGGAGAGGCAATCTCATCCAGCTGGAGC
TCGGGAAGGAGATGGCAACCGCTTCGGGGCGTCTAAGAGGGTGGCGAGGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis