Browse Element(s) Details


OsAffx.18728.1.S1_at

Description tigr:9639.m00701
TID=OsAffx.18728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07609NANA11+3863627..3863913NA
LOC_Os11g07620OsAffx.7039.1.S1_at11/1111+3882256..3883183hypothetical protein
LOC_Os11g07630OsAffx.18728.1.S1_at11/1111+3884997..3885398hypothetical protein
LOC_Os11g07640Os.29067.2.S1_at5/1111+3891550..3892088hypothetical protein
LOC_Os11g07650NANA11+3903497..3908404retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g07660NANA11+3909167..3909636hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18728.1.S1_at--823--7371Chr11:3885269..3885293 (25 bp)
GTGACGGTGGCCATGACAGCGACAA
LOC_Os11g07630
OsAffx.18728.1.S1_at--388--1651Chr11:3885252..3885276 (25 bp)
AGCGACAACCATGAGCCAGGCAGAT
LOC_Os11g07630
OsAffx.18728.1.S1_at--314--8271Chr11:3885234..3885258 (25 bp)
GGCAGATCTACCCATGAGCAGTGAC
LOC_Os11g07630
OsAffx.18728.1.S1_at--783--5751Chr11:3885212..3885236 (25 bp)
GACGGGAGCGGCAGATCTGTCACCT
LOC_Os11g07630
OsAffx.18728.1.S1_at--853--471Chr11:3885198..3885222 (25 bp)
ATCTGTCACCTATGGCCTCAAGAGT
LOC_Os11g07630
OsAffx.18728.1.S1_at--28--4471Chr11:3885184..3885208 (25 bp)
GCCTCAAGAGTGATGGATCCGCCGA
LOC_Os11g07630
OsAffx.18728.1.S1_at--762--7971Chr11:3885170..3885194 (25 bp)
GGATCCGCCGATAGATGCCTTGGGA
LOC_Os11g07630
OsAffx.18728.1.S1_at--99--7791Chr11:3885140..3885164 (25 bp)
GGTGCGGCGATAGGAGACTTCCAAC
LOC_Os11g07630
OsAffx.18728.1.S1_at--930--5851Chr11:3885086..3885110 (25 bp)
GAGCCTAGGCGGATCCAAGACAAAT
LOC_Os11g07630
OsAffx.18728.1.S1_at--1119--5611Chr11:3885068..3885092 (25 bp)
GACAAATCGTGGATCTTGCCGCGGC
LOC_Os11g07630
OsAffx.18728.1.S1_at--141--4691Chr11:3885048..3885072 (25 bp)
GCGGCTTTGCAATGTGGGCTACTAC
LOC_Os11g07630
Target Sequence 
GTGACGGTGGCCATGACAGCGACAACCATGAGCCAGGCAGATCTACCCATGAGCAGTGACGGGAGCGGCAGATCTGTCAC
CTATGGCCTCAAGAGTGATGGATCCGCCGATAGATGCCTTGGGAGGGATGGTGCGGCGATAGGAGACTTCCAACGGTGGA
GAGCGGCGGATCCGGCGGTGGTGGAGCCTAGGCGGATCCAAGACAAATCGTGGATCTTGCCGCGGCTTTGCAATGTGGGC
TACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis