Browse Element(s) Details


OsAffx.7373.1.S1_at

Description tigr:9639.m03794
TID=OsAffx.7373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4130011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g41290Os.55095.1.S1_at11/1111+24249175..24250275BTB/POZ domain containing protein, expressed
LOC_Os11g41300OsAffx.7373.1.S1_x_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.7373.1.S1_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.31424.1.S1_x_at2/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.7374.1.S1_at11/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.31424.1.S1_x_at1/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41320OsAffx.31426.1.S1_at10/1111+24278979..24280090hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7373.1.S1_at--662--4411Chr11:24255376..24255400 (25 bp)
GCCAGGACGTCCGACGTGAGGTTCA
LOC_Os11g41300
OsAffx.7373.1.S1_at--486--4231Chr11:24255728..24255752 (25 bp)
CCGAGCAGCACGATTGCCCTGAGCT
LOC_Os11g41300
OsAffx.7373.1.S1_at--1077--1511Chr11:24255731..24255755 (25 bp)
AGCAGCACGATTGCCCTGAGCTCAA
LOC_Os11g41300
OsAffx.7373.1.S1_at--164--9731Chr11:24255752..24255776 (25 bp)
TCAAGAAGGCCATCCTGAGGTTCAT
LOC_Os11g41300
OsAffx.7373.1.S1_at--788--2731Chr11:24255754..24255778 (25 bp)
AAGAAGGCCATCCTGAGGTTCATGG
LOC_Os11g41300
OsAffx.7373.1.S1_at--956--2951Chr11:24255757..24255781 (25 bp)
AAGGCCATCCTGAGGTTCATGGCGT
LOC_Os11g41300
OsAffx.7373.1.S1_at--636--4431Chr11:24255760..24255784 (25 bp)
GCCATCCTGAGGTTCATGGCGTCGC
LOC_Os11g41300
OsAffx.7373.1.S1_at--884--3491Chr11:24255804..24255828 (25 bp)
CATGGCGAGCGATGGGTATGAGCAC
LOC_Os11g41300
OsAffx.7373.1.S1_at--1027--6911Chr11:24255819..24255843 (25 bp)
GTATGAGCACCTGGTGACAAGCTTC
LOC_Os11g41300
OsAffx.7373.1.S1_at--800--691Chr11:24255821..24255845 (25 bp)
ATGAGCACCTGGTGACAAGCTTCCC
LOC_Os11g41300
OsAffx.7373.1.S1_at--949--5931Chr11:24255823..24255847 (25 bp)
GAGCACCTGGTGACAAGCTTCCCCT
LOC_Os11g41300
Target Sequence 
GCCAGGACGTCCGACGTGAGGTTCAAGGTCGGCGGCGAGACGTTCCCGGCGCACCGGTGCGTCCTCGCGGCGCGGTCGCC
GGTGTTCAGGGCGGAGCTCCTCGGCCCCATGAGGGAGCACGCCGCGACGACCATCCGCGTCGACGACATGGACGCCTCCG
TGTTCGCCGCTCTGCTGCGCTTCGTCTACACCGACGAGCTGCCGGAGCTGGACGGCGGCAGCGCGGCGGCGATGGCGCAG
CACCTGCTGGTGGCGGCGGACAGGTACGACATGGAGAGGCTGAAGAAGGTGTGCGAGGACAGGATGGTCAGGCACCTCGA
CGTCGGCACGGCGGCGACGTCGCTGGCGTTGGCCGAGCAGCACGATTGCCCTGAGCTCAAGAAGGCCATCCTGAGGTTCA
TGGCGTCGCCGGCGAGGTTGAAGGCGGTCATGGCGAGCGATGGGTATGAGCACCTGGTGACAAGCTTCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis