Browse Element(s) Details


Os.55149.1.S1_at

Description gb:AK107589.1
DB_XREF= gi:32992798
TID=Os.55149.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-A04, full insert sequence.
FL= gb:AK107589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13350Os.48839.1.S1_at11/118+7933379..7938142ubiquitin carboxyl-terminal hydrolase family protein, putative, expressed
LOC_Os08g13360Os.27001.2.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360OsAffx.16975.1.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360Os.27001.3.A1_a_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13369NANA8+7947133..7949172NA
LOC_Os08g13380OsAffx.5802.1.S1_at11/118+7949938..7950678hypothetical protein
LOC_Os08g13390Os.55149.1.S1_at11/118+7957286..7962203expressed protein
LOC_Os08g13400NANA8+7966587..7966832hypothetical protein
LOC_Os08g13410NANA8+7970000..7972730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13420OsAffx.16976.1.S1_at11/118+7976216..7979195D-mannose binding lectin family protein
LOC_Os08g13430Os.18400.1.S1_at11/118+7984754..7987386expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55149.1.S1_at--381--2571Chr08:7958192..7958216 (25 bp)
AACTGTGTGAGGATCAGACCAGCAA
LOC_Os08g13390
Os.55149.1.S1_at--528--8191Chr08:7958165..7958189 (25 bp)
GGAAGTACCTTATAGCCAATTATCG
LOC_Os08g13390
Os.55149.1.S1_at--209--1691Chr08:7958152..7958176 (25 bp)
AGCCAATTATCGCAGTTAAGCCTTC
LOC_Os08g13390
Os.55149.1.S1_at--606--8691Chr08:7958124..7958148 (25 bp)
TGTCCAAATGTCAGTCACTTCAGTT
LOC_Os08g13390
Os.55149.1.S1_at--265--4531Chr08:7958049..7958073 (25 bp)
GCCCCATCCGAATTCAGTGTTCTGA
LOC_Os08g13390
Os.55149.1.S1_at--382--2651Chr08:7957979..7958003 (25 bp)
AAGCCAGCAAAAGGTAATTCCTCAT
LOC_Os08g13390
Os.55149.1.S1_at--1019--3151Chr08:7957964..7957988 (25 bp)
AATTCCTCATGGTTCACTACATCAG
LOC_Os08g13390
Os.55149.1.S1_at--419--9751Chr08:7957939..7957963 (25 bp)
TAATTTAGGGCTTCTGTTGTCCAAA
LOC_Os08g13390
Os.55149.1.S1_at--1151--8811Chr08:7957925..7957949 (25 bp)
TGTTGTCCAAATGTCAGTAGTTCAG
LOC_Os08g13390
Os.55149.1.S1_at--505--7871Chr08:7957879..7957903 (25 bp)
GGTTTCCTTACTAAGAATGTTCAAG
LOC_Os08g13390
Os.55149.1.S1_at--836--3051Chr08:7957831..7957855 (25 bp)
AATCATGTCGGTTCCGTAAGTGTGG
LOC_Os08g13390
Target Sequence 
AACTGTGTGAGGATCAGACCAGCAAAAGGAAGTACCTTATAGCCAATTATCGCAGTTAAGCCTTCNGTTGTCCAAATGTC
AGTCACTTCAGTTATTTAGATGGACAAGTATGCTCCAGNAAACACTCCTTCCATGCCACTGTACGCCCCATCCGAATTCA
GTGTTCTGAAGGTGTTGAGAAGGTNAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGGTAATTCCTCATG
GTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGTTCAGTAACATCAGTATTCTAGATTNGGTTTC
CTTACTAAGAATGTTCAAGCACTGGGCCGGCGTTTGTNTTTTAATCATGTCGGTTCCGTAAGTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis