Browse Element(s) Details


Os.55278.1.S1_at

Description gb:AK107789.1
DB_XREF= gi:32992998
TID=Os.55278.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D03, full insert sequence.
FL= gb:AK107789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1469011/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14654Os.52443.1.S1_at11/114+8196368..8213126Vacuolar protein-sorting protein 33 homolog, putative, expressed
LOC_Os04g14670Os.46012.2.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.46012.3.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.27088.1.A1_x_at2/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.54691.1.S1_x_at1/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14680Os.4987.1.S1_at11/114+8219095..8221710L-ascorbate peroxidase 3, putative, expressed
LOC_Os04g14690Os.55278.1.S1_at11/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14690Os.50352.1.S1_at10/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14700NANA4+8232202..8235347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14710Os.50352.1.S1_at2/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14710OsAffx.9287.1.S1_at1/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14719NANA4+8250391..8251356NA
LOC_Os04g14730NANA4+8254569..8255024expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55278.1.S1_at--1036--8931Chr04:8226799..8226823 (25 bp)
TGACGACGGCACTTATGCAGCGGCT
LOC_Os04g14690
Os.55278.1.S1_at--201--7351Chr04:8226718..8226742 (25 bp)
GTGAAGCCCCGCCTGCGAAAACTGT
LOC_Os04g14690
Os.55278.1.S1_at--51--4591Chr04:8226704..8226728 (25 bp)
GCGAAAACTGTTTTGGACCGCCTGG
LOC_Os04g14690
Os.55278.1.S1_at--154--10291Chr04:8226669..8226693 (25 bp)
TTTCCTAGTAGTGATCTTGTCTCGT
LOC_Os04g14690
Os.55278.1.S1_at--500--6431Chr04:8226657..8226681 (25 bp)
GATCTTGTCTCGTTGTTATCGTTTT
LOC_Os04g14690
Os.55278.1.S1_at--322--7171Chr04:8226651..8226675 (25 bp)
GTCTCGTTGTTATCGTTTTATTAGG
LOC_Os04g14690
Os.55278.1.S1_at--356--1011Chr04:8226629..8226653 (25 bp)
AGGTTAGAAACCATCAGTGCGATAC
LOC_Os04g14690
Os.55278.1.S1_at--667--5551Chr04:8226623..8226647 (25 bp)
GAAACCATCAGTGCGATACATAAGA
LOC_Os04g14690
Os.55278.1.S1_at--461--1231Chr04:8226597..8226621 (25 bp)
AGTTGACATGTACTTATATGGTTTT
LOC_Os04g14690
Os.55278.1.S1_at--765--271Chr04:8226582..8226606 (25 bp)
ATATGGTTTTTACGGCAGTTTGGCA
LOC_Os04g14690
Os.55278.1.S1_at--332--10351Chr04:8226575..8226599 (25 bp)
TTTTACGGCAGTTTGGCACTATTAT
LOC_Os04g14690
Target Sequence 
TGACGACGGCACTTATGCAGCGGCTCGGCTCCTCCCTCTCCTATGTGGGAGCAGTGGATGGAGGAGAGCCGTGGCCGGAG
GGTGAAGCCCCGCCTGCGAAAACTGTTTTGGACCGCCTGGAAAAAATCTTTTTCCTAGTAGTGATCTTGTCTCGTTGTTA
TCGTTTTATTAGGTTAGAAACCATCAGTGCGATACATAAGAAAGTTGACATGTACTTATATGGTTTTTACGGCAGTTTGG
CACTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis