Browse Element(s) Details


Os.55284.1.S1_at

Description gb:AK107797.1
DB_XREF= gi:32993006
TID=Os.55284.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D11, full insert sequence.
FL= gb:AK107797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0714011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07109NANA5+3730076..3732121NA
LOC_Os05g07120Os.56950.1.S1_at11/115+3734495..3737806Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g07130Os.15700.1.S1_at11/115+3741132..37494746-phosphofructo-2-kinase family protein, expressed
LOC_Os05g07140Os.55284.1.S1_at11/115+3750419..3751115Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07150OsAffx.26766.1.S1_at11/115+3754191..3756033hypothetical protein
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55284.1.S1_at--422--4691Chr05:3750679..3750703 (25 bp)
GCGGCAACTACGAGCTCGAGGTGAT
LOC_Os05g07140
Os.55284.1.S1_at--582--1871Chr05:3750688..3750712 (25 bp)
ACGAGCTCGAGGTGATCAGCGTCGC
LOC_Os05g07140
Os.55284.1.S1_at--188--1051Chr05:3750697..3750721 (25 bp)
AGGTGATCAGCGTCGCGGCGTGCGC
LOC_Os05g07140
Os.55284.1.S1_at--931--3911Chr05:3750734..3750758 (25 bp)
CGGCCTGGACGCCAAGCAGCTGGGC
LOC_Os05g07140
Os.55284.1.S1_at--914--1911Chr05:3750915..3750939 (25 bp)
ACGTGGCTCGCCGTGAGCTCGACGT
LOC_Os05g07140
Os.55284.1.S1_at--74--4091Chr05:3751018..3751042 (25 bp)
CGAGCTAGGTGTGTTGAGTATCAGT
LOC_Os05g07140
Os.55284.1.S1_at--722--6651Chr05:3751030..3751054 (25 bp)
GTTGAGTATCAGTGTACATTCGATC
LOC_Os05g07140
Os.55284.1.S1_at--229--8751Chr05:3751042..3751066 (25 bp)
TGTACATTCGATCACTTGCTAGAGT
LOC_Os05g07140
Os.55284.1.S1_at--419--4051Chr05:3751050..3751074 (25 bp)
CGATCACTTGCTAGAGTTTGTATCT
LOC_Os05g07140
Os.55284.1.S1_at--1096--6071Chr05:3751063..3751087 (25 bp)
GAGTTTGTATCTATGCACTTGAAAA
LOC_Os05g07140
Os.55284.1.S1_at--1139--5091Chr05:3751077..3751101 (25 bp)
GCACTTGAAAACAAAATTCGGGTAT
LOC_Os05g07140
Target Sequence 
GCGGCAACTACGAGCTCGAGGTGATCAGCGTCGCGGCGTGCGCGCTGGAGGGCGGCGGCCTGGACGCCAAGCAGCTGGGC
GCGCTGCCGGTGTTCACGTGGGGGTCTTCTTCTCCGGCGACGGCGGCGGCGGACGCCGCCGTGCAGTGCGCGGTATGCCT
CGGGGAGATGGAGGACGGCGAGCTGGGGAGGCTGCTCCCGGCGTGCCGCCACGTGTTCCACGCCGAGTGCATCGACACGT
GGCTCGCCGTGAGCTCGACGTGCCCGGTGTGCAGGGCGGCGGTGGGGGCGGCGGAGGATGATGAGCCAGCGGCGGCTCCG
GTCGCTGGCGTGTCGCCGGCGAGCTAGGTGTGTTGAGTATCAGTGTACATTCGATCACTTGCTAGAGTTTGTATCTATGC
ACTTGAAAACAAAATTCGGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis