Browse Element(s) Details


OsAffx.26766.1.S1_at

Description tigr:9633.m00641
TID=OsAffx.26766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0715011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07109NANA5+3730076..3732121NA
LOC_Os05g07120Os.56950.1.S1_at11/115+3734495..3737806Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g07130Os.15700.1.S1_at11/115+3741132..37494746-phosphofructo-2-kinase family protein, expressed
LOC_Os05g07140Os.55284.1.S1_at11/115+3750419..3751115Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07150OsAffx.26766.1.S1_at11/115+3754191..3756033hypothetical protein
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07200OsAffx.4268.1.S1_at10/115+3776254..3780393hypothetical protein
LOC_Os05g07200OsAffx.9524.1.S1_at3/115+3776254..3780393hypothetical protein
LOC_Os05g07200Os.37083.1.S1_at1/115+3776254..3780393hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26766.1.S1_at--192--6831Chr05:3755075..3755099 (25 bp)
GTTTCAAGCAGTTACTGTGGCCACA
LOC_Os05g07150
OsAffx.26766.1.S1_at--838--2111Chr05:3755142..3755166 (25 bp)
ACATGTGCCCATCTATTTGAATATT
LOC_Os05g07150
OsAffx.26766.1.S1_at--947--251Chr05:3755229..3755253 (25 bp)
ATATGCCAACACTATGAGTCTGACA
LOC_Os05g07150
OsAffx.26766.1.S1_at--486--1151Chr05:3755245..3755269 (25 bp)
AGTCTGACATGATTGCTAACCACCC
LOC_Os05g07150
OsAffx.26766.1.S1_at--837--1811Chr05:3755278..3755302 (25 bp)
ACGCGGATCCAAGTAATGACCCAAG
LOC_Os05g07150
OsAffx.26766.1.S1_at--227--691Chr05:3755293..3755317 (25 bp)
ATGACCCAAGATTCTATTCGCCTGC
LOC_Os05g07150
OsAffx.26766.1.S1_at--571--7071Chr05:3755505..3755529 (25 bp)
GTAATCACTGGCCAATTGGTTGCAA
LOC_Os05g07150
OsAffx.26766.1.S1_at--378--8251Chr05:3755545..3755569 (25 bp)
GGCAGCTGACCCAGTATTTGTGGAA
LOC_Os05g07150
OsAffx.26766.1.S1_at--166--7791Chr05:3755625..3755649 (25 bp)
GGTGCTCCAGTGCTGAGTCACCAAG
LOC_Os05g07150
OsAffx.26766.1.S1_at--466--2691Chr05:3755647..3755671 (25 bp)
AAGCAGCAGTCATTGGTTTATACCA
LOC_Os05g07150
OsAffx.26766.1.S1_at--508--311Chr05:3755666..3755690 (25 bp)
ATACCATGGCCGTATTGAGTCTTTG
LOC_Os05g07150
Target Sequence 
GTTTCAAGCAGTTACTGTGGCCACAGGATTTACAGCTGTTGAGGTTGAGAACTTCTACTACATTCTAACATGTGCCCATC
TATTTGAATATTTCTATTCAGCTGAGATCAAAGTTGACTGTGACAAATTAAATTCTTGGTTTAACATTTTGATCATATGC
CAACACTATGAGTCTGACATGATTGCTAACCACCCAAACCTTTACGCGGATCCAAGTAATGACCCAAGATTCTATTCGCC
TGCAAGAATCGTTAAATTGGATCAAAGTAAAGATTTGATGCTGTTGAAAGTGAGCAAGAGAAAAGACTCAGTAATCACTG
GCCAATTGGTTGCAAGAGACAGAGTATATGGGCAGCTGACCCAGTATTTGTGGAAAGGATACAGCATGCATCTAGTTGAG
CTGAATGTAGTTGGAGGAGCAGGTTGTTCTGGTGCTCCAGTGCTGAGTCACCAAGCAGCAGTCATTGGTTTATACCATGG
CCGTATTGAGTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis