Browse Element(s) Details


OsAffx.9524.1.S1_at

Description gb:NM_190768.1
DB_XREF= gi:34908619
GEN=P0677H08.10
TID=OsAffx.9524.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0677H08.10 (P0677H08.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g072003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07150OsAffx.26766.1.S1_at11/115+3754191..3756033hypothetical protein
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07200OsAffx.4268.1.S1_at10/115+3776254..3780393hypothetical protein
LOC_Os05g07200OsAffx.9524.1.S1_at3/115+3776254..3780393hypothetical protein
LOC_Os05g07200Os.37083.1.S1_at1/115+3776254..3780393hypothetical protein
LOC_Os05g07210Os.50277.1.S1_at11/115+3785993..3788799ZIP zinc/iron transport family protein, expressed
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9524.1.S1_at--924--9091Chr01:37925562..37925586 (25 bp)
TGCTCGGTCGCTCGCTAGTGCTTTA
NONE
OsAffx.9524.1.S1_at--41--9351Chr01:37925573..37925597 (25 bp)
TCGCTAGTGCTTTATCCACTGCAAG
NONE
OsAffx.9524.1.S1_at--73--10351Chr01:37925583..37925607 (25 bp)
TTTATCCACTGCAAGCATCGTGCGG
NONE
OsAffx.9524.1.S1_at--451--4971Chr01:37925597..37925621 (25 bp)
GCATCGTGCGGCAACGGATCGGCAT
NONE
OsAffx.9524.1.S1_at--537--7971Chr01:37925612..37925636 (25 bp)
GGATCGGCATGAGCCATGTGACACT
NONE
OsAffx.9524.1.S1_at--27--8931Chr01:37925621..37925645 (25 bp)
TGAGCCATGTGACACTCGCGAGTCG
NONE
OsAffx.9524.1.S1_at--569--9331Chr01:37925636..37925659 (24 bp)
TCGCGAGTCGCGAGATCACCCAAGC
NONE
OsAffx.9524.1.S1_at--1148--6031NONE
GAGATCACCCAAGCGCATGCTTATC
NONE
OsAffx.9524.1.S1_at--840--43728Chr08:27905562..27905583 (22 bp)
CCAAGCGCATGCTTATCCGGTCCGT
NONE
OsAffx.9524.1.S1_at--921--43127Chr10:17012173..17012197 (25 bp)
CCATTAATGAGGGAGGACAGGGTTA
NONE
OsAffx.9524.1.S1_at--240--31937Chr10:17012224..17012426 (25 bp)
CAAGTTTTGGTCAAAATCCACCAGA
NONE
Target Sequence 
TGCTCGGTCGCTCGCTAGTGCTTTATCCACTGCAAGCATCGTGCGGCAACGGATCGGCATGAGCCATGTGACACTCGCGA
GTCGCGAGATCACCCAAGCGCATGCTTATCCGGTCCGTGATCGGTCGCAGTGTGTGACCGGTCACAGACCGCAAACAACC
NTGNTTCCACGTTGCACCTGCTTCCGGCGGAGTGGAGGTTGGTATGACCCATCCCATCGGAGGGTCATTCGGACAGCAGC
CATTGCAAATCTCCGCCCATTAATGAGGGAGGACAGGGTTATCCCGGTGTCAGNCGAAGGTACNNGCCAAGTTTTGGTCA
AAATCCACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis