Browse Element(s) Details


Os.37083.1.S1_at

Description gb:AK060991.1
DB_XREF= gi:32971009
TID=Os.37083.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.16 (P0560B06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-D03, full insert sequence.
FL= gb:AK060991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g072001/11hypothetical protein
LOC_Os04g130501/11hypothetical protein
LOC_Os07g318701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07150OsAffx.26766.1.S1_at11/115+3754191..3756033hypothetical protein
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07200OsAffx.4268.1.S1_at10/115+3776254..3780393hypothetical protein
LOC_Os05g07200OsAffx.9524.1.S1_at3/115+3776254..3780393hypothetical protein
LOC_Os05g07200Os.37083.1.S1_at1/115+3776254..3780393hypothetical protein
LOC_Os05g07210Os.50277.1.S1_at11/115+3785993..3788799ZIP zinc/iron transport family protein, expressed
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37083.1.S1_at--699--108540Chr12:11034771..11034795 (25 bp)
TTGGCACGTCAGCCCCGGCCAGATA
NONE
Os.37083.1.S1_at--1121--84357Chr12:26495115..26495139 (25 bp)
GGCCAGATACATTCCAGGCTTCATC
NONE
Os.37083.1.S1_at--801--10711Chr07:19176749..19177207 (25 bp)
AGGGCAGACGTGTAGCATGCTGAAC
NONE
Os.37083.1.S1_at--696--8759Chr02:13394504..13394528 (25 bp)
TGTAGCATGCTGAACTGACACGTGG
NONE
Os.37083.1.S1_at--504--33522Chr10:19171529..19171553 (25 bp)
CACGATGCATCTGCCTCCGGTGGAG
NONE
Os.37083.1.S1_at--5--100922Chr10:19171560..19171584 (25 bp)
TAGGTATGACCCATCTCGTCGGATG
NONE
Os.37083.1.S1_at--258--101322Chr10:19171564..19171588 (25 bp)
TATGACCCATCTCGTCGGATGGTCA
NONE
Os.37083.1.S1_at--1146--4521Chr10:19171572..19171596 (25 bp)
ATCTCGTCGGATGGTCATTTGGAAA
NONE
Os.37083.1.S1_at--106--94523Chr10:19171578..19171602 (25 bp)
TCGGATGGTCATTTGGAAAGCAGCC
NONE
Os.37083.1.S1_at--1135--8511Chr07:18948021..18948045 (25 bp)
TGGAAAGCAGCCATGGTAAATCTCC
NONE
Os.37083.1.S1_at--653--3216Chr07:19177057..19177081 (25 bp)
CAAGAGAGGGTAGGTCCCCACCCAG
NONE
Target Sequence 
TTGGCACGTCAGCCCCGGCCAGATACATTCCAGGCTTCATCGCAACCATTGCAAGGAAGTCATTGTATGAAGAAGGGCAG
ACGTGTAGCATGCTGAACTGACACGTGGTGGACAAGAATGACCGGTCTGTGACTGGTCTGACGCCGGTCGCGTCATCGGC
AGACAACCGTGCTCCCACGATGCATCTGCCTCCGGTGGAGTGGAGGTAGGTATGACCCATCTCGTCGGATGGTCATTTGG
AAAGCAGCCATGGTAAATCTCCGCCCATTAATGAGGGAGTAACAGGGAGATCCCCGGTGTCAGGCGAGAGACGGCGCTGA
GCCTCACTCAAGGACAAGTTGTGATTTAGCTTCCAGGCGAAGGTGCAAGCCAAGTTTTGGTCAAGAGAGGGTAGGTCCCC
ACCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis