Browse Element(s) Details


Os.50277.1.S1_at

Description gb:AK103730.1
DB_XREF= gi:32988939
TID=Os.50277.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138E20, full insert sequence.
FL= gb:AK120502.1 gb:AK103730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0721011/11ZIP zinc/iron transport family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07200OsAffx.4268.1.S1_at10/115+3776254..3780393hypothetical protein
LOC_Os05g07200OsAffx.9524.1.S1_at3/115+3776254..3780393hypothetical protein
LOC_Os05g07200Os.37083.1.S1_at1/115+3776254..3780393hypothetical protein
LOC_Os05g07210Os.50277.1.S1_at11/115+3785993..3788799ZIP zinc/iron transport family protein, expressed
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0030001biological_processmetal ion transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50277.1.S1_at--1062--771Chr05:3786457..3786481 (25 bp)
ATGTGCGTAATGTTCTCGGTGACAA
LOC_Os05g07210
Os.50277.1.S1_at--526--9751Chr05:3786357..3786381 (25 bp)
TAATAGAAGGGCTCCTTGGCTCACT
LOC_Os05g07210
Os.50277.1.S1_at--292--10871Chr05:3786342..3786366 (25 bp)
TTGGCTCACTTTCTTCTGGAATCCT
LOC_Os05g07210
Os.50277.1.S1_at--106--5271Chr05:3786324..3786348 (25 bp)
GAATCCTTGTCTACATGGCACTTGT
LOC_Os05g07210
Os.50277.1.S1_at--320--2071Chr05:3786305..3786329 (25 bp)
ACTTGTCGATCTCATTTCTCTTGAT
LOC_Os05g07210
Os.50277.1.S1_at--637--1031Chr05:3786237..3786261 (25 bp)
AGGTCTCTTATGTCGCATTAGTGCT
LOC_Os05g07210
Os.50277.1.S1_at--522--7971Chr05:3786211..3786235 (25 bp)
GGATCTGCATCCATGTCTATATTAG
LOC_Os05g07210
Os.50277.1.S1_at--467--10211Chr05:3786192..3786216 (25 bp)
TATTAGCTCTCTGGGCATAGGTCAT
LOC_Os05g07210
Os.50277.1.S1_at--646--6091Chr05:3786106..3786130 (25 bp)
GAGTCAGGACTTCCCTCATGTAAAT
LOC_Os05g07210
Os.50277.1.S1_at--466--5271Chr05:3786046..3786070 (25 bp)
GAATGCCTTTTGATACTGTGAGCCA
LOC_Os05g07210
Os.50277.1.S1_at--813--10371Chr05:3786021..3786045 (25 bp)
TTTTCGTCTCCTGATTACCATGGAC
LOC_Os05g07210
Target Sequence 
ATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGA
TAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCG
ATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTA
GTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATT
GATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACT
TAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis