Browse Element(s) Details


Os.15700.1.S1_at

Description gb:AF456329.1
DB_XREF= gi:18251458
TID=Os.15700.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.15700 (NCBI UniGene Cluster)
DEF=Oryza sativa fructose-6-phosphate-2-kinasefructose-2,6-bisphosphatase mRNA, complete cds.
PROD=fructose-6-phosphate-2-kinasefructose-2,6-bisphosphatase
FL= gb:AF456329.1 gb:AK072243.1 gb:AK105066.1 gb:AK065086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0713011/116-phosphofructo-2-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07100Os.40855.5.S1_x_at2/115+3723400..3724467hypothetical protein
LOC_Os05g07109NANA5+3730076..3732121NA
LOC_Os05g07120Os.56950.1.S1_at11/115+3734495..3737806Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g07130Os.15700.1.S1_at11/115+3741132..37494746-phosphofructo-2-kinase family protein, expressed
LOC_Os05g07140Os.55284.1.S1_at11/115+3750419..3751115Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07150OsAffx.26766.1.S1_at11/115+3754191..3756033hypothetical protein
LOC_Os05g07170OsAffx.17637.1.S1_at4/115+3762045..3762419hypothetical protein
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006000biological_processfructose metabolism
GO:0006499biological_processN-terminal protein myristoylation
GO:0004331molecular_functionfructose-2,6-bisphosphate 2-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15700.1.S1_at--571--3991Chr05:3748655..3748679 (25 bp)
CCCCGTGGAGAATCTTACCTTGATG
LOC_Os05g07130
Os.15700.1.S1_at--848--5731Chr05:3748823..3748847 (25 bp)
GACTGGAACCTGTTATCATTGAGCT
LOC_Os05g07130
Os.15700.1.S1_at--247--5931Chr05:3748859..3748883 (25 bp)
GAGCACCAGTAGTCGTTATTTCCCA
LOC_Os05g07130
Os.15700.1.S1_at--488--1731Chr05:3748957..3748978 (22 bp)
ACCAGGCTGTATTGCGGGCGCTATA
LOC_Os05g07130
Os.15700.1.S1_at--627--4671Chr05:3748967..3748991 (25 bp)
GCGGGCGCTATATGCATATTTCGCT
LOC_Os05g07130
Os.15700.1.S1_at--792--231Chr05:3748982..3749006 (25 bp)
ATATTTCGCTGACAGGCCTCTGAGG
LOC_Os05g07130
Os.15700.1.S1_at--592--5331Chr05:3749007..3749120 (25 bp)
GAAGTCCCAGATATTGAGATGCCTC
LOC_Os05g07130
Os.15700.1.S1_at--200--1871Chr05:3749266..3749290 (25 bp)
ACGATCGAGTCACTACAGGTCTACA
LOC_Os05g07130
Os.15700.1.S1_at--374--1031Chr05:3749282..3749306 (25 bp)
AGGTCTACAGCTACCACATTGTCAT
LOC_Os05g07130
Os.15700.1.S1_at--605--2071Chr05:3749297..3749321 (25 bp)
ACATTGTCATTTTTCTCCCGACGGT
LOC_Os05g07130
Os.15700.1.S1_at--549--8731Chr05:3749356..3749380 (25 bp)
TGTAACCCACTATACCCATGAATCA
LOC_Os05g07130
Target Sequence 
CCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGT
AGTCGTTATTTCCCACCAGGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAAGTCCCAGATA
TTGAGATGCCTCTCCACACCATAATTGAGATACAAATGGGAGTCACAGGTGTTGAGGAGAAGAGGTACAAGCTCATGGAC
TGAATATACATACATCTAGGCTCAGTAGGACAGCAAGTCTTTGCTGTTTTCAGATAGTCATACAGTAACACAGATATACG
ATCGAGTCACTACAGGTCTACAGCTACCACATTGTCATTTTTCTCCCGACGGTGCAAAAACAAAAACTAGCACCTCCGGT
GTAAAACTGTAACCCACTATACCCATGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis